CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cotton-PK
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps c3
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - PK [ View Map Set Info ]
Map Name: c3
Map Start: 0 cM
Map Stop: 150.8 cM
Features by Type:
95 Marker
7 QTL
102 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 102.       of 5 | Next
Cotton - PK - c3
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
pGH358 Marker 94.6 Cotton - Graimondii_physical - Gr_Chr05 pGH358 Marker Cotton 53,068,896 - 53,069,806 (bp) Automated name-based View Maps
Cotton - HDC - 3 pGH358 Marker 58 (cM) Automated name-based View Maps
pGH550 Marker 99.3 Cotton - Graimondii_physical - Gr_Chr05 pGH550 Marker Cotton 54,967,301 - 54,968,166 (bp) Automated name-based View Maps
Cotton - HDC - 3 pGH550 Marker 55.3 (cM) Automated name-based View Maps
pGH619 Marker 71.7 Cotton - HDC - 3 pGH619 Marker 79.6 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr05 pGH619 Marker Cotton 35,503,297 - 35,504,170 (bp) Automated name-based View Maps
pGH739 Marker 85.5 Cotton - HDC - 3 pGH739 Marker 66.5 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr05 pGH739 Marker Cotton 48,841,604 - 48,842,131 (bp) Automated name-based View Maps
pVNC021 Marker 96.9 Cotton - Graimondii_physical - Gr_Chr13 pVNC021 Marker Cotton 53,245,280 - 53,246,521 (bp) Automated name-based View Maps
Cotton - HDC - 3 pVNC021 Marker 55.9 (cM) Automated name-based View Maps
PXP2_60 Marker 129.5 Cotton - Graimondii_physical - Gr_Chr05 PXP2_60 Marker Cotton 60,303,718 - 60,304,438 (bp) Automated name-based View Maps
Cotton - HDC - 3 pXP2_60 Marker 47.4 (cM) Automated name-based View Maps
PXP3_44 Marker 71.7 Cotton - HDC - 3 pXP3_44 Marker 79.6 (cM) Automated name-based View Maps
Unig06D07 Marker 54.7 Cotton - HDC - 3 Unig06D07 Marker 98.6 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 Unig06D07 Marker Cotton 7,285,249 - 7,285,877 (bp) Automated name-based View Maps
pAR149 Marker 57.1 Cotton - HDC - 3 pAR149 Marker 95.9 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr06 pAR149 Marker Cotton 8,133,259 - 8,133,918 (bp) Automated name-based View Maps
pAR180 Marker 85.5 Cotton - HDC - 3 pAR180 Marker 66.5 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr05 pAR180 Marker Cotton 49,221,822 - 49,222,283 (bp) Automated name-based View Maps
pAR387 Marker 94.6 Cotton - HDC - 3 pAR387 Marker 58 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr05 pAR387 Marker Cotton 53,361,993 - 53,362,578 (bp) Automated name-based View Maps
pAR476 Marker 0 Cotton - HDC - 24 pAR476 Marker 74.5 (cM) Automated name-based View Maps
Cotton - HDC - 3 pAR476 Marker 139.9 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr03 pAR476 Marker Cotton 45,663,635 - 45,664,361 (bp) Automated name-based View Maps
Cotton - PK - D03 pAR476 Marker 83.4 (cM) Automated name-based View Maps
pAR879 Marker 72.6 Cotton - HDC - 3 pAR879 Marker 78.7 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr07 pAR879 Marker Cotton 7,775,209 - 7,775,429 (bp) Automated name-based View Maps
pGH364 Marker 80.2 Cotton - HDC - 3 pGH364 Marker 71.5 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr08 pGH364 Marker Cotton 46,050,199 - 46,050,868 (bp) Automated name-based View Maps
pGH551 Marker 81.9 Cotton - PK - c14 pGH551 Marker 73.4 (cM) Automated name-based View Maps
Cotton - HDC - 14 pGH551 Marker 75.5 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr05 pGH551 Marker Cotton 39,190,835 - 39,191,861 (bp) Automated name-based View Maps
Cotton - HDC - 3 pGH551 Marker 69.9 (cM) Automated name-based View Maps
pGH639 Marker 44.2 Cotton - HDC - 3 pGH639 Marker 110.3 (cM) Automated name-based View Maps
Cotton - GVc - 3 pGH639 Marker 0 (cM) Automated name-based View Maps
Cotton - GVc - 17 pGH639 Marker 9.3 (cM) Automated name-based View Maps
Cotton - PK - c17 pGH639 Marker 37.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr03 pGH639 Marker Cotton 41,355,951 - 41,356,420 (bp) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c3 pGH639 Marker 0 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c17 pGH639 Marker 8.5 (cM) Automated name-based View Maps
Cotton - HDC - 17 pGH639 Marker 92.5 (cM) Automated name-based View Maps
PGH740 Marker 98.1 Cotton - Graimondii_physical - Gr_Chr05 PGH740 Marker Cotton 54,631,054 - 54,631,328 (bp) Automated name-based View Maps
Cotton - HDC - 3 pGH740 Marker 55.6 (cM) Automated name-based View Maps
pVNC313 Marker 80.2 Cotton - HDC - 3 pVNC313 Marker 71.5 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr13 pVNC313 Marker Cotton 14,457,469 - 14,457,652 (bp) Automated name-based View Maps
PXP3_28 Marker 101.1 Cotton - Graimondii_physical - Gr_Chr05 PXP3_28 Marker Cotton 56,655,334 - 56,655,943 (bp) Automated name-based View Maps
Cotton - HDC - 3 pXP3_28 Marker 54.8 (cM) Automated name-based View Maps
pXP3_89 Marker 132.4 Cotton - HDC - 3 pXP3_89 Marker 46.7 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr05 pXP3_89 Marker Cotton 60,548,774 - 60,549,337 (bp) Automated name-based View Maps
Cotton - PK - c14 pXP3_89 Marker 113.9 (cM) Automated name-based View Maps
Cotton - HDC - 14 pXP3_89 Marker 34.2 (cM) Automated name-based View Maps
Unig22B04 Marker 70.5 Cotton - HDC - 3 Unig22B04 Marker 80.9 (cM) Automated name-based View Maps
Unig23D03 Marker 78.5 Cotton - HDC - 3 Unig23D03 Marker 73.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr11 Unig23D03 Marker Cotton 23,857,423 - 23,858,083 (bp) Automated name-based View Maps
Cotton - HDC - 20 Unig23D03 Marker 83.8 (cM) Automated name-based View Maps
Cotton - PK - c20 Unig23D03 Marker 80.5 (cM) Automated name-based View Maps
Unig24B10 Marker 67.2 Cotton - HDC - 3 Unig24B10 Marker 84.6 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 Unig24B10 Marker Cotton 63,104,176 - 63,104,826 (bp) Automated name-based View Maps
Unig25A01 Marker 77.7 Cotton - PK - A01 Unig25A01 Marker 132.3 (cM) Automated name-based View Maps
Cotton - HDC - 3 Unig25A01 Marker 73.9 (cM) Automated name-based View Maps
Cotton - HDC - 13 Unig25A01 Marker 36.6 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 Unig25A01 Marker Cotton 18,311,250 - 18,311,924 (bp) Automated name-based View Maps
Unig25G07 Marker 3.7 Cotton - HDC - 13 Unig25G07 Marker 93.9 (cM) Automated name-based View Maps
Cotton - PK - A01 Unig25G07 Marker 58.7 (cM) Automated name-based View Maps
Cotton - HDC - 3 Unig25G07 Marker 137.4 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr03 Unig25G07 Marker Cotton 45,482,506 - 45,482,619 (bp) Automated name-based View Maps