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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set Cotton-PK
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Maps c4
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 Correspondence Options
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Include Correspondence Types:
Evidence Ignore Use Less Than
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Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - PK [ View Map Set Info ]
Map Name: c4
Map Start: 0 cM
Map Stop: 186.1 cM
Features by Type:
99 Marker
7 QTL
106 Total

Map Features

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Items 1 to 25 of 106.       of 5 | Next
Cotton - PK - c4
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
pAR372 Marker 166.7 Cotton - HDC - 4 pAR372 Marker 44.5 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 pAR372 Marker Cotton 66,859,325 - 66,860,021 (bp) Automated name-based View Maps
pAR4_48 Marker 109.5 Cotton - PK - c22 pAR4_48 Marker 36.8 (cM) Automated name-based View Maps
Cotton - HDC - 4 pAR04_48 Marker 59.2 (cM) Automated name-based View Maps
Cotton - HDC - 22 pAR04_48 Marker 57.3 (cM) Automated name-based View Maps
pAR571 Marker 132.3 Cotton - HDC - 24 pAR571 Marker 55 (cM) Automated name-based View Maps
Cotton - HDC - 4 pAR571 Marker 53.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 pAR571 Marker Cotton 19,706,607 - 19,707,481 (bp) Automated name-based View Maps
Cotton - PK - D03 pAR571 Marker 54 (cM) Automated name-based View Maps
pAR926 Marker 110.2 Cotton - HDC - 4 pAR926 Marker 59 (cM) Automated name-based View Maps
pAR986 Marker 100 Cotton - HDC - 22 pAR986 Marker 60.1 (cM) Automated name-based View Maps
Cotton - PK - c22 pAR986 Marker 34.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr12 pAR986 Marker Cotton 29,210,462 - 29,211,279 (bp) Automated name-based View Maps
Cotton - HDC - 4 pAR986 Marker 61.6 (cM) Automated name-based View Maps
pGH374 Marker 31.8 Cotton - HDC - 4 pGH374 Marker 73.6 (cM) Automated name-based View Maps
Cotton - HDC - 14 pGH374 Marker 10 (cM) Automated name-based View Maps
Cotton - PK - c14 pGH374 Marker 163.3 (cM) Automated name-based View Maps
pGH559 Marker 170 Cotton - HDC - 19 pGH559 Marker 21.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 pGH559 Marker Cotton 69,117,175 - 69,118,031 (bp) Automated name-based View Maps
Cotton - HDC - 4 pGH559 Marker 43.6 (cM) Automated name-based View Maps
Cotton - PK - D08 pGH559 Marker 223.9 (cM) Automated name-based View Maps
pVNC058 Marker 96.5 Cotton - HDC - 4 pVNC058 Marker 62.5 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr07 pVNC058 Marker Cotton 52,861,440 - 52,862,416 (bp) Automated name-based View Maps
Unig06B07 Marker 60.8 Cotton - HDC - 23 Unig06B07 Marker 1 (cM) Automated name-based View Maps
Cotton - PK - c23 Unig06B07 Marker 1 (cM) Automated name-based View Maps
Cotton - HDC - 4 Unig06B07 Marker 68.8 (cM) Automated name-based View Maps
Unig06G05 Marker 108.9 Cotton - HDC - 4 Unig06G05 Marker 59.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 Unig06G05 Marker Cotton 7,866,080 - 7,866,685 (bp) Automated name-based View Maps
Unig22D08 Marker 90.5 Cotton - Graimondii_physical - Gr_Chr12 Unig22D08 Marker Cotton 29,470,352 - 29,470,993 (bp) Automated name-based View Maps
Cotton - HDC - 4 Unig22D08 Marker 63.8 (cM) Automated name-based View Maps
Unig23G08 Marker 150 Cotton - Graimondii_physical - Gr_Chr09 Unig23G08 Marker Cotton 68,316,304 - 68,316,953 (bp) Automated name-based View Maps
Cotton - HDC - 4 Unig23G08 Marker 48.8 (cM) Automated name-based View Maps
Unig25D03 Marker 109.9 Cotton - HDC - 4 Unig25D03 Marker 59.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 Unig25D03 Marker Cotton 64,167,838 - 64,168,467 (bp) Automated name-based View Maps
Unig26D09 Marker 107.2 Cotton - HDC - 4 Unig26D09 Marker 59.8 (cM) Automated name-based View Maps
Unig27B06 Marker 105.4 Cotton - Graimondii_physical - Gr_Chr09 Unig27B06 Marker Cotton 46,366,198 - 46,366,864 (bp) Automated name-based View Maps
Cotton - HDC - 4 Unig27B06 Marker 62.3 (cM) Automated name-based View Maps
Cotton - HDC - 4 Unig27B06 Marker 60.2 (cM) Automated name-based View Maps
Unig28C06 Marker 105.4 Cotton - HDC - 4 Unig28C06 Marker 60.2 (cM) Automated name-based View Maps
Unig28D06 Marker 22.5 Cotton - HDC - 4 Unig28D06 Marker 81.5 (cM) Automated name-based View Maps
Cotton - HDC - 4 Unig28D06 Marker 82.4 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr12 Unig28D06 Marker Cotton 34,316,238 - 34,316,892 (bp) Automated name-based View Maps
W15 Marker 19.1 Cotton - Graimondii_physical - Gr_Chr05 W15 Marker Cotton 63,926,196 - 63,926,847 (bp) Automated name-based View Maps
Cotton - HDC - 4 W15 Marker 82.4 (cM) Automated name-based View Maps
A1172 Marker 92.9 Cotton - Guazuncho2xVH8-BC1 - c4 A1172 Marker 74 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr12 A1172 Marker Cotton 27,208,472 - 27,209,175 (bp) Automated name-based View Maps
Cotton - GVc - 4 A1172 Marker 29.6 (cM) Automated name-based View Maps
Cotton - HDC - 4 A1172 Marker 63.4 (cM) Automated name-based View Maps
A1310 Marker 132.3 Cotton - Guazuncho2xVH8-BC1 - c12 A1310 Marker 29.4 (cM) Automated name-based View Maps
Cotton - HDC - 4 A1310 Marker 53.3 (cM) Automated name-based View Maps
Cotton - HDC - 26 A1310 Marker 119.8 (cM) Automated name-based View Maps
Cotton - GVc - 12 A1310 Marker 25.8 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr08 A1310 Marker Cotton 53,685,800 - 53,687,481 (bp) Automated name-based View Maps
Cotton - HDC - 12 A1310 Marker 96.6 (cM) Automated name-based View Maps
Cotton - PK - c26 A1310 Marker 35.1 (cM) Automated name-based View Maps
A1543 Marker 108.9 Cotton - HDC - 4 A1543 Marker 59.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 A1543 Marker Cotton 47,355,415 - 47,356,313 (bp) Automated name-based View Maps
Cotton - HDC - 4 A1543 Marker 59.8 (cM) Automated name-based View Maps
A1638 Marker 108 Cotton - HDC - 4 A1638 Marker 59.5 (cM) Automated name-based View Maps
A1717 Marker 138.2 Cotton - PK - A03 A1717 Marker 104.2 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr07 A1717 Marker Cotton 17,618,300 - 17,619,318 (bp) Automated name-based View Maps
Cotton - HDC - 4 A1717 Marker 51.8 (cM) Automated name-based View Maps
Cotton - HDC - 11 A1717 Marker 111.1 (cM) Automated name-based View Maps
A1759 Marker 135.7 Cotton - HDC - 21 A1759 Marker 79 (cM) Automated name-based View Maps
Cotton - PK - D02 A1759 Marker 148 (cM) Automated name-based View Maps
Cotton - HDC - 4 A1759 Marker 52.4 (cM) Automated name-based View Maps
BNL0625 Marker 22.5 Cotton - PK - A03 BNL0625 Marker 156 (cM) Automated name-based View Maps
Cotton - CH - 11 BNL0625 Marker 119.3 (cM) Automated name-based View Maps
Cotton - PK - A03 BNL0625 Marker 69.4 (cM) Automated name-based View Maps
Cotton - HDC - 11 BNL0625 Marker 137.2 (cM) Automated name-based View Maps
Cotton - E3 - 11 BNL0625 Marker 98.3 (cM) Automated name-based View Maps
Cotton - TH - 11 BNL0625 Marker 76.1 (cM) Automated name-based View Maps
Cotton - HDC - 12 BNL0625 Marker 56.3 (cM) Automated name-based View Maps
Cotton - PK - c12 BNL0625 Marker 83.8 (cM) Automated name-based View Maps
Cotton - GVc - 11 BNL0625 Marker 86.8 (cM) Automated name-based View Maps
Cotton - T3 - 11 BNL0625 Marker 99.78 (cM) Automated name-based View Maps
Cotton - TH - 11 BNL0625 Marker 81.7 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr07 BNL0625 Marker Cotton 28,319,538 - 28,319,828 (bp) Automated name-based View Maps
Cotton - HDC - 11 BNL0625 Marker 130.2 (cM) Automated name-based View Maps