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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Cotton-PK
(Reference Set)
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Correspondences
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Maps c5
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - PK [ View Map Set Info ]
Map Name: c5
Map Start: 0 cM
Map Stop: 239.6 cM
Features by Type:
166 Marker
12 QTL
178 Total

Map Features

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Items 1 to 25 of 178.       of 8 | Next
Cotton - PK - c5
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Gate4DB07 Marker 76.9 Cotton - HDC - 5 Gate4DB07 Marker 84.5 (cM) Automated name-based View Maps
Gate4DC12 Marker 157.8 Cotton - HDC - 5 Gate4DC12 Marker 47.2 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 Gate4DC12 Marker Cotton 44,133,824 - 44,133,985 (bp) Automated name-based View Maps
LGA22 Marker 71.3 Cotton - HDC - 5 LGA22 Marker 84.9 (cM) Automated name-based View Maps
Cotton - PK - D08 LGA22 Marker 98.4 (cM) Automated name-based View Maps
Cotton - HDC - 19 LGA22 Marker 116.2 (cM) Automated name-based View Maps
M16_085 Marker 16.9 Cotton - HDC - 5 M16_085 Marker 102.1 (cM) Automated name-based View Maps
M16_117 Marker 116.2 Cotton - Graimondii_physical - Gr_Chr04 M16_117 Marker Cotton 60,917,887 - 60,918,575 (bp) Automated name-based View Maps
Cotton - HDC - 5 M16_117 Marker 81.8 (cM) Automated name-based View Maps
NBS535 Marker 142.7 Cotton - PK - D08 NBS535 Marker 175.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 NBS535 Marker Cotton 29,099,010 - 29,099,523 (bp) Automated name-based View Maps
Cotton - HDC - 19 NBS535 Marker 64.1 (cM) Automated name-based View Maps
Cotton - HDC - 5 NBS535 Marker 62.6 (cM) Automated name-based View Maps
P05_02 Marker 162.7 Cotton - HDC - 5 P05_02 Marker 44.9 (cM) Automated name-based View Maps
P06_12 Marker 71.3 Cotton - Graimondii_physical - Gr_Chr13 P06_12 Marker Cotton 48,453,451 - 48,453,957 (bp) Automated name-based View Maps
Cotton - HDC - 5 P06_12 Marker 84.9 (cM) Automated name-based View Maps
P06_58 Marker 59.8 Cotton - HDC - 5 P06_58 Marker 85.7 (cM) Automated name-based View Maps
P12_20 Marker 99.1 Cotton - HDC - 6 P12_20 Marker 121.1 (cM) Automated name-based View Maps
Cotton - PK - c6 P12_20 Marker 8.3 (cM) Automated name-based View Maps
Cotton - HDC - 5 P12_20 Marker 83 (cM) Automated name-based View Maps
PAR01C07 Marker 239.6 Cotton - HDC - 5 pAR01C07 Marker 11.8 (cM) Automated name-based View Maps
Cotton - HDC - 5 pAR01C07 Marker 8.7 (cM) Automated name-based View Maps
PAR01F02 Marker 51.7 Cotton - HDC - 5 pAR01F02 Marker 86.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr05 pAR01F02 Marker Cotton 54,214,398 - 54,214,869 (bp) Automated name-based View Maps
pAR042 Marker 156.5 Cotton - HDC - 5 pAR042 Marker 47.8 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 pAR042 Marker Cotton 39,943,484 - 39,943,783 (bp) Automated name-based View Maps
pAR065 Marker 15.7 Cotton - HDC - 5 pAR065 Marker 102.8 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 pAR065 Marker Cotton 3,756,871 - 3,757,756 (bp) Automated name-based View Maps
Cotton - HDC - 19 pAR065 Marker 162 (cM) Automated name-based View Maps
Cotton - PK - D08 pAR065 Marker 29.8 (cM) Automated name-based View Maps
PAR08D12 Marker 198.5 Cotton - HDC - 22 pAR08D12 Marker 25.7 (cM) Automated name-based View Maps
Cotton - PK - c22 PAR08D12 Marker 68.4 (cM) Automated name-based View Maps
Cotton - HDC - 5 pAR08D12 Marker 28 (cM) Automated name-based View Maps
PAR1_28 Marker 86.7 Cotton - HDC - 5 pAR01_28 Marker 83.8 (cM) Automated name-based View Maps
pAR10B09 Marker 101.8 Cotton - Graimondii_physical - Gr_Chr09 pAR10B09 Marker Cotton 17,503,552 - 17,503,808 (bp) Automated name-based View Maps
Cotton - HDC - 5 pAR10B09 Marker 82.8 (cM) Automated name-based View Maps
pAR122 Marker 68.7 Cotton - HDC - 5 pAR122 Marker 85.1 (cM) Automated name-based View Maps
pAR137 Marker 112.8 Cotton - HDC - 19 pAR137 Marker 94.2 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 pAR137 Marker Cotton 19,409,766 - 19,410,388 (bp) Automated name-based View Maps
Cotton - HDC - 5 pAR137 Marker 82 (cM) Automated name-based View Maps
Cotton - PK - D08 pAR137 Marker 128 (cM) Automated name-based View Maps
A1153 Marker 104.4 Cotton - Graimondii_physical - Gr_Chr09 A1153 Marker Cotton 17,858,892 - 17,859,454 (bp) Automated name-based View Maps
Cotton - HDC - 5 A1153 Marker 82.6 (cM) Automated name-based View Maps
pAR200 Marker 108.9 Cotton - HDC - 5 pAR200 Marker 82.3 (cM) Automated name-based View Maps
A1159 Marker 152.2 Cotton - HDC - 5 A1159 Marker 52.1 (cM) Automated name-based View Maps
Cotton - HDC - 5 A1159 Marker 53.5 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr12 A1159 Marker Cotton 9,664,111 - 9,665,819 (bp) Automated name-based View Maps
pAR333 Marker 178.4 Cotton - Graimondii_physical - Gr_Chr12 pAR333 Marker Cotton 7,033,770 - 7,034,630 (bp) Automated name-based View Maps
Cotton - HDC - 5 pAR333 Marker 37.5 (cM) Automated name-based View Maps
A1318 Marker 68.7 Cotton - HDC - 19 A1318 Marker 114.8 (cM) Automated name-based View Maps
Cotton - PK - D08 A1318 Marker 99 (cM) Automated name-based View Maps
Cotton - HDC - 5 A1318 Marker 85.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 A1318 Marker Cotton 12,475,616 - 12,477,351 (bp) Automated name-based View Maps
pAR351 Marker 226.9 Cotton - HDC - 5 pAR351 Marker 14.7 (cM) Automated name-based View Maps