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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-S52xCatongo
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG4
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - S52xCatongo [ View Map Set Info ]
Map Name: LG4
Map Start: 0 cM
Map Stop: 96 cM
Features by Type:
10 Marker
4 QTL
14 Total

Map Features

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Items 1 to 14 of 14.
Cocoa - S52xCatongo - LG4
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
mTcCIR18 Marker 23.8 Cocoa - Physical map - Tc04 mTcCIR18 Marker 8,532,821 - 8,533,219 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG4 mTcCIR18 Marker 18.7 (cM) Automated name-based View Maps
Cocoa - test - LG4 mTcCIR18 Marker 18.7 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR18 Marker 18.7 (cM) Automated name-based View Maps
Cocoa - DR1xCatongo - LG4 mTcCIR18 Marker 13.9 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG4 mTcCIR18 Marker 17.9 (cM) Automated name-based View Maps
gTcCIR119 Marker 45 Cocoa - test - LG4 gTcCIR119 Marker 32.7 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 gTcCIR119 Marker 32.7 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG4 gTcCIR119 Marker 30.1 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc04 gTcCIR119 Marker 15,674,153 - 15,674,576 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG4 gTcCIR119 Marker 32.7 (cM) Automated name-based View Maps
gTcCIR129 Marker 87.8 Cocoa - test - LG4 gTcCIR129 Marker 64.1 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 gTcCIR129 Marker 64.1 (cM) Automated name-based View Maps
Cocoa - IMC78xCatongo - LG4 gTcCIR129 Marker 65.4 (cM) Automated name-based View Maps
Cocoa - DR1xCatongo - LG4 gTcCIR129 Marker 72.3 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG4 gTcCIR129 Marker 58 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG4 gTcCIR129 Marker 64.1 (cM) Automated name-based View Maps
gTcCIR136 Marker 53 Cocoa - ref_UPA402xUF676 - LG4 gTcCIR136 Marker 43.1 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc04 gTcCIR136 Marker 17,484,278 - 17,484,823 (bp) Automated name-based View Maps
Cocoa - IMC78xCatongo - LG4 gTcCIR136 Marker 44.1 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG4 gTcCIR136 Marker 36.2 (cM) Automated name-based View Maps
Cocoa - DR1xCatongo - LG4 gTcCIR136 Marker 50.8 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 gTcCIR136 Marker 43.1 (cM) Automated name-based View Maps
Cocoa - test - LG4 gTcCIR136 Marker 43.1 (cM) Automated name-based View Maps
AFLP_SxC50/8 Marker 0 No other positions
AFLP_SxC52/1 Marker 14.7 No other positions
AFLP_SxC55/8 Marker 34.4 No other positions
AFLP_SxC39/20 Marker 69.1 No other positions
CCG1419 Marker 81.8 Cocoa - DR1xCatongo - LG4 CCG1419 Marker 62.6 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 CCG1419 Marker 53.5 (cM) Automated name-based View Maps
Cocoa - test - LG4 CCG1419 Marker 53.5 (cM) Automated name-based View Maps
AFLP_SxC13/8 Marker 95.4 No other positions
SxC_BLG_lg4 QTL 82 - 96 No other positions
SxC_BSI_lg4 QTL 82 - 96 No other positions
SxC_WBW_lg4 QTL 82 - 96 No other positions
SxC_OVN_lg4 QTL 0 - 24 No other positions