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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Cotton-T3
(Reference Set)
Min.
Correspondences
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Maps 10
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - T3 [ View Map Set Info ]
Map Name: 10
Map Start: 0 cM
Map Stop: 109 cM
Features by Type:
76 Marker
76 Total

Map Features

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Items 1 to 25 of 76.       of 4 | Next
Cotton - T3 - 10
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
UCcg10864_146 Marker 18.88 Cotton - HDC - 10 UCcg10864_146 Marker 51.8 (cM) Automated name-based View Maps
DPL0831 Marker 20.46 Cotton - HDC - 10 DPL0831 Marker 52.2 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr11 DPL0831 Marker Cotton 58,550,143 - 58,550,650 (bp) Automated name-based View Maps
Gh199 Marker 22.5 Cotton - E3 - 10 Gh199 Marker 60.8 (cM) Automated name-based View Maps
Cotton - HDC - 10 Gh199 Marker 52.8 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr11 Gh199 Marker Cotton 53,686,960 - 53,687,576 (bp) Automated name-based View Maps
UCcot10162_137 Marker 27.55 Cotton - HDC - 10 UCcot10162_137 Marker 53.9 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr11 UCcot10162_137 Marker Cotton 56,773,308 - 56,773,410 (bp) Automated name-based View Maps
MUSS068 Marker 33.55 Cotton - E3 - 10 MUSS068 Marker 54.4 (cM) Automated name-based View Maps
Cotton - HDC - 10 MUSS068 Marker 55 (cM) Automated name-based View Maps
MUCS009 Marker 34.73 Cotton - Graimondii_physical - Gr_Chr09 MUCS009 Marker Cotton 54,487,417 - 54,487,947 (bp) Automated name-based View Maps
Cotton - HDC - 10 MUCS009 Marker 55.3 (cM) Automated name-based View Maps
MUSB1048 Marker 35.16 Cotton - Graimondii_physical - Gr_Chr11 MUSB1048 Marker Cotton 61,283,194 - 61,283,673 (bp) Automated name-based View Maps
Cotton - E3 - 20 MUSB1048 Marker 21.7 (cM) Automated name-based View Maps
Cotton - HDC - 10 MUSB1048 Marker 55.5 (cM) Automated name-based View Maps
Cotton - HDC - 20 MUSB1048 Marker 20.1 (cM) Automated name-based View Maps
NAU1182 Marker 36.85 Cotton - CH - 10 NAU1182 Marker 64 (cM) Automated name-based View Maps
Cotton - GVc - 10 NAU1182 Marker 112.2 (cM) Automated name-based View Maps
Cotton - HDC - 10 CLU3539 Marker 56 (cM) Automated name-based View Maps
Cotton - TH - 10 NAU1182 Marker 76.5 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c10 NAU1182 Marker 43.77 (cM) Automated name-based View Maps
Cotton - CH - 10 NAU1182 Marker 63.8 (cM) Automated name-based View Maps
UCcg11002_222 Marker 39.26 Cotton - HDC - 10 UCcg11002_222 Marker 56.7 (cM) Automated name-based View Maps
BNL2960 Marker 40.73 Cotton - GVc - 10 BNL2960 Marker 114 (cM) Automated name-based View Maps
Cotton - CH - 10 BNL2960 Marker 61.5 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c10 BNL2960 Marker 134 (cM) Automated name-based View Maps
Cotton - PK - c10 BNL2960 Marker 130.9 (cM) Automated name-based View Maps
Cotton - TH - 10 BNL2960 Marker 80 (cM) Automated name-based View Maps
Cotton - HDC - 10 BNL2960 Marker 57.1 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c10 BNL2960 Marker 41.59 (cM) Automated name-based View Maps
TMB0161 Marker 42.37 Cotton - Graimondii_physical - Gr_Chr11 TMB0161 Marker Cotton 52,087,892 - 52,088,515 (bp) Automated name-based View Maps
Cotton - HDC - 10 TMB0161 Marker 58.1 (cM) Automated name-based View Maps
Cotton - T3 - 20 TMB0161 Marker 76.43 (cM) Automated name-based View Maps
Cotton - HDC - 20 TMB0161 Marker 72 (cM) Automated name-based View Maps
MUSS082 Marker 42.95 Cotton - HDC - 10 MUSS082 Marker 58.5 (cM) Automated name-based View Maps
BNL3563 Marker 45.48 Cotton - Guazuncho2xVH8-BC1 - c10 BNL3563 Marker 130 (cM) Automated name-based View Maps
Cotton - CH - 10 BNL3563 Marker 58.9 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr11 BNL3563 Marker Cotton 51,975,551 - 51,976,086 (bp) Automated name-based View Maps
Cotton - TH - 10 BNL3563 Marker 72.1 (cM) Automated name-based View Maps
Cotton - HDC - 10 BNL3563 Marker 60 (cM) Automated name-based View Maps
Cotton - GVc - 10 BNL3563 Marker 112.4 (cM) Automated name-based View Maps
TMB0352 Marker 46.05 Cotton - HDC - 10 TMB0352 Marker 60.7 (cM) Automated name-based View Maps
MUSB1127 Marker 46.64 Cotton - HDC - 10 CLU3013 Marker 61.5 (cM) Automated name-based View Maps
MUSB1168 Marker 49.33 Cotton - Graimondii_physical - Gr_Chr11 MUSB1168 Marker Cotton 16,699,145 - 16,699,731 (bp) Automated name-based View Maps
Cotton - HDC - 10 MUSB1168 Marker 65.2 (cM) Automated name-based View Maps
DPL0317 Marker 51.45 Cotton - HDC - 10 DPL0317 Marker 68.1 (cM) Automated name-based View Maps
Cotton - T3 - 20 DPL0317 Marker 7.72 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr11 DPL0317 Marker Cotton 175,545 - 175,841 (bp) Automated name-based View Maps
Cotton - HDC - 20 DPL0317 Marker 145.3 (cM) Automated name-based View Maps
Cotton - E3 - 10 DPL0317 Marker 179.6 (cM) Automated name-based View Maps
BNL3071 Marker 53.13 Cotton - T3 - 20 BNL3071 Marker 73.61 (cM) Automated name-based View Maps
Cotton - HDC - 20 CLU31 Marker 75.2 (cM) Automated name-based View Maps
Cotton - CH - 20 BNL3071 Marker 9 (cM) Automated name-based View Maps
Cotton - HDC - 10 CLU31 Marker 70.3 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c20 BNL3071 Marker 62.53 (cM) Automated name-based View Maps
Cotton - GVc - 20 BNL3071 Marker 102 (cM) Automated name-based View Maps
Cotton - HDC - 20 CLU31 Marker 75.5 (cM) Automated name-based View Maps
UCcg10239_93 Marker 53.9 Cotton - HDC - 10 UCcg10239_93 Marker 71.1 (cM) Automated name-based View Maps
MUSS347 Marker 53.91 Cotton - T3 - 20 MUSS347 Marker 70.71 (cM) Automated name-based View Maps
Cotton - HDC - 20 CLU3400 Marker 78.6 (cM) Automated name-based View Maps
Cotton - HDC - 10 CLU3400 Marker 71.4 (cM) Automated name-based View Maps
UCcg10239_279 Marker 53.98 Cotton - HDC - 10 UCcg10239_279 Marker 71.5 (cM) Automated name-based View Maps
CIR016 Marker 55.23 Cotton - Graimondii_physical - Gr_Chr11 CIR016 Marker Cotton 46,811,308 - 46,811,776 (bp) Automated name-based View Maps
Cotton - HDC - 10 CIR016 Marker 73.1 (cM) Automated name-based View Maps
TMB1356 Marker 56.05 Cotton - HDC - 10 TMB1356 Marker 74.2 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr11 TMB1356 Marker Cotton 10,109,187 - 10,109,783 (bp) Automated name-based View Maps
NAU1041 Marker 56.91 Cotton - Graimondii_physical - Gr_Chr11 NAU1041 Marker Cotton 9,898,057 - 9,898,728 (bp) Automated name-based View Maps
Cotton - HDC - 10 NAU1041 Marker 75.4 (cM) Automated name-based View Maps
Cotton - TH - 10 NAU1041 Marker 64.2 (cM) Automated name-based View Maps
TMB0325 Marker 57.39 Cotton - E3 - 10 TMB0325 Marker 84.8 (cM) Automated name-based View Maps
Cotton - HDC - 10 TMB0325 Marker 76 (cM) Automated name-based View Maps