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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cotton-T3
(Reference Set)
Min.
Correspondences
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Maps 12
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 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - T3 [ View Map Set Info ]
Map Name: 12
Map Start: 0 cM
Map Stop: 122.78 cM
Features by Type:
85 Marker
85 Total

Map Features

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Items 1 to 25 of 85.       of 4 | Next
Cotton - T3 - 12
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
Gh243 Marker 71.05 Cotton - HDC - 26 Gh243 Marker 84.3 (cM) Automated name-based View Maps
Cotton - E3 - 26 Gh243 Marker 51.4 (cM) Automated name-based View Maps
Cotton - HDC - 12 Gh243 Marker 53.6 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr08 Gh243 Marker Cotton 41,188,572 - 41,189,249 (bp) Automated name-based View Maps
Cotton - T3 - 26 Gh243 Marker 50.41 (cM) Automated name-based View Maps
Cotton - E3 - 12 Gh243 Marker 110.2 (cM) Automated name-based View Maps
DPL0743 Marker 72.85 Cotton - HDC - 12 CLU191 Marker 56 (cM) Automated name-based View Maps
DOW083 Marker 74.29 Cotton - HDC - 12 DOW083 Marker 57.8 (cM) Automated name-based View Maps
DPL0010 Marker 75.79 Cotton - HDC - 12 DPL0010 Marker 59.7 (cM) Automated name-based View Maps
BNL1673 Marker 76.17 Cotton - E3 - 12 BNL1673 Marker 116.4 (cM) Automated name-based View Maps
Cotton - HDC - 12 BNL1673 Marker 60.2 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr08 BNL1673 Marker Cotton 42,588,287 - 42,588,583 (bp) Automated name-based View Maps
Cotton - TH - 12 BNL1673 Marker 83.2 (cM) Automated name-based View Maps
Cotton - CH - 12 BNL1673 Marker 114.5 (cM) Automated name-based View Maps
Cotton - HDC - 22 BNL1673 Marker 48.3 (cM) Automated name-based View Maps
Cotton - PK - c22 BNL1673 Marker 44.9 (cM) Automated name-based View Maps
Cotton - GVc - 12 BNL1673 Marker 72.3 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - c12 BNL1673 Marker 64.5 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c12 BNL1673 Marker 34.22 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c12 BNL1673 Marker 81 (cM) Automated name-based View Maps
BNL2717 Marker 77.94 Cotton - HDC - 12 BNL2717 Marker 62.4 (cM) Automated name-based View Maps
Cotton - E3 - 12 BNL2717 Marker 119.4 (cM) Automated name-based View Maps
UCD186 Marker 78.43 Cotton - HDC - 12 UCD186 Marker 63 (cM) Automated name-based View Maps
BNL2709 Marker 80.82 Cotton - E3 - 12 BNL2709 Marker 123.3 (cM) Automated name-based View Maps
Cotton - HDC - 12 BNL2709 Marker 66.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr08 BNL2709 Marker Cotton 45,330,853 - 45,331,244 (bp) Automated name-based View Maps
DPL0204 Marker 81.84 Cotton - Graimondii_physical - Gr_Chr08 DPL0204 Marker Cotton 45,827,663 - 45,828,356 (bp) Automated name-based View Maps
Cotton - HDC - 12 DPL0204 Marker 67.3 (cM) Automated name-based View Maps
DPL0139 Marker 83.07 Cotton - HDC - 12 DPL0139 Marker 69 (cM) Automated name-based View Maps
Cotton - E3 - 12 DPL0139 Marker 128 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr08 DPL0139 Marker Cotton 47,156,717 - 47,157,318 (bp) Automated name-based View Maps
UCcg10998_153 Marker 83.49 Cotton - HDC - 12 UCcg10998_153 Marker 69.5 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr08 UCcg10998_153 Marker Cotton 46,171,589 - 46,171,691 (bp) Automated name-based View Maps
TMB1146 Marker 83.84 Cotton - Graimondii_physical - Gr_Chr08 TMB1146 Marker Cotton 46,791,531 - 46,792,149 (bp) Automated name-based View Maps
Cotton - HDC - 12 TMB1146 Marker 69.9 (cM) Automated name-based View Maps
UCcg11087_206 Marker 84.38 Cotton - HDC - 12 UCcg11087_206 Marker 70.6 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr08 UCcg11087_206 Marker Cotton 48,025,193 - 48,025,295 (bp) Automated name-based View Maps
CIR148 Marker 84.47 Cotton - GVc - 12 CIR148 Marker 51.9 (cM) Automated name-based View Maps
Cotton - CH - 12 CIR148 Marker 88.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr08 CIR148 Marker Cotton 47,766,747 - 47,767,080 (bp) Automated name-based View Maps
Cotton - HDC - 12 CIR148 Marker 70.8 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c12 CIR148 Marker 55 (cM) Automated name-based View Maps
BNL1679 Marker 85.33 Cotton - Guazuncho2xVH8-BC2 - c12 BNL1679 Marker 46.6 (cM) Automated name-based View Maps
Cotton - GVc - 12 BNL1679 Marker 55.6 (cM) Automated name-based View Maps
Cotton - HDC - 12 BNL1679 Marker 71.8 (cM) Automated name-based View Maps
Cotton - TH - 12 BNL1679 Marker 95.9 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c12 BNL1679 Marker 24.41 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c12 BNL1679 Marker 57.7 (cM) Automated name-based View Maps
Cotton - CH - 12 BNL1679 Marker 92.5 (cM) Automated name-based View Maps
DPL0400 Marker 86.74 Cotton - Graimondii_physical - Gr_Chr08 DPL0400 Marker Cotton 48,342,065 - 48,342,674 (bp) Automated name-based View Maps
Cotton - HDC - 12 DPL0400 Marker 73.5 (cM) Automated name-based View Maps
DPL0100 Marker 87.21 Cotton - HDC - 12 CLU5 Marker 74 (cM) Automated name-based View Maps
Cotton - HDC - 22 CLU5 Marker 57.3 (cM) Automated name-based View Maps
Cotton - HDC - 26 CLU5 Marker 121.8 (cM) Automated name-based View Maps
BNL1045 Marker 88.71 Cotton - HDC - 26 CLU5 Marker 121.8 (cM) Automated name-based View Maps
Cotton - CH - 12 BNL1045 Marker 83.5 (cM) Automated name-based View Maps
Cotton - GVc - 26 BNL1045 Marker 22.2 (cM) Automated name-based View Maps
Cotton - HDC - 22 CLU5 Marker 57.3 (cM) Automated name-based View Maps
Cotton - HDC - 12 CLU5 Marker 74 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c26 BNL1045 Marker 49.2 (cM) Automated name-based View Maps
Cotton - PK - c22 BNL1045 Marker 36.8 (cM) Automated name-based View Maps
Gh463 Marker 89.95 Cotton - HDC - 12 CLU260 Marker 77.4 (cM) Automated name-based View Maps
Cotton - E3 - 26 Gh463 Marker 71.2 (cM) Automated name-based View Maps
Cotton - HDC - 26 CLU260 Marker 98.9 (cM) Automated name-based View Maps
Gh312 Marker 90.83 Cotton - E3 - 12 Gh312 Marker 102.3 (cM) Automated name-based View Maps
Cotton - HDC - 12 Gh312 Marker 78.4 (cM) Automated name-based View Maps
JESPR121 Marker 93.02 Cotton - Graimondii_physical - Gr_Chr08 JESPR121 Marker Cotton 50,423,378 - 50,423,708 (bp) Automated name-based View Maps
Cotton - HDC - 26 JESPR121 Marker 104.8 (cM) Automated name-based View Maps
Cotton - T3 - 26 JESPR121 Marker 72.17 (cM) Automated name-based View Maps
Cotton - HDC - 12 JESPR121 Marker 81 (cM) Automated name-based View Maps
Cotton - CH - 12 JESPR121 Marker 78.2 (cM) Automated name-based View Maps
Cotton - E3 - 12 JESPR121 Marker 145.6 (cM) Automated name-based View Maps
Cotton - TH - 26 JESPR121 Marker 83.7 (cM) Automated name-based View Maps
TMB1321 Marker 93.27 Cotton - HDC - 12 TMB1321 Marker 81.4 (cM) Automated name-based View Maps
CIR081 Marker 94.94 Cotton - HDC - 12 CIR081 Marker 83.3 (cM) Automated name-based View Maps
Cotton - E3 - 12 CIR081 Marker 151.3 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c12 CIR081 Marker 19.84 (cM) Automated name-based View Maps
Cotton - TH - 12 CIR081 Marker 112.8 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c12 CIR081 Marker 42.9 (cM) Automated name-based View Maps
Cotton - GVc - 12 CIR081 Marker 41.5 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr08 CIR081 Marker Cotton 51,028,446 - 51,028,736 (bp) Automated name-based View Maps
CIR293 Marker 96.71 Cotton - CH - 12 CIR293 Marker 73.1 (cM) Automated name-based View Maps
Cotton - HDC - 12 CLU93 Marker 85.4 (cM) Automated name-based View Maps
Cotton - GVc - 12 CIR293 Marker 38.1 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c12 CIR293 Marker 41.6 (cM) Automated name-based View Maps
Cotton - E3 - 12 CIR293 Marker 153 (cM) Automated name-based View Maps
CM68 Marker 98.42 Cotton - HDC - 25 CLU134 Marker 86.1 (cM) Automated name-based View Maps
Cotton - E3 - 12 CM68 Marker 155.7 (cM) Automated name-based View Maps
Cotton - HDC - 12 CLU134 Marker 87.1 (cM) Automated name-based View Maps