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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Cotton-T3
(Reference Set)
Min.
Correspondences
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Maps 15
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - T3 [ View Map Set Info ]
Map Name: 15
Map Start: 0 cM
Map Stop: 118 cM
Features by Type:
98 Marker
98 Total

Map Features

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Items 1 to 25 of 98.       of 4 | Next
Cotton - T3 - 15
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
JESPR297 Marker 81.26 Cotton - Graimondii_physical - Gr_Chr11 JESPR297 Marker Cotton 50,137,525 - 50,138,164 (bp) Automated name-based View Maps
Cotton - E3 - 16 JESPR297 Marker 113.2 (cM) Automated name-based View Maps
Cotton - HDC - 16 JESPR297 Marker 41.5 (cM) Automated name-based View Maps
Cotton - HDC - 7 JESPR297 Marker 67.5 (cM) Automated name-based View Maps
Cotton - HDC - 15 JESPR297 Marker 64 (cM) Automated name-based View Maps
Cotton - CH - 7 JESPR297 Marker 24.8 (cM) Automated name-based View Maps
Cotton - TH - 16 JESPR297 Marker 86.3 (cM) Automated name-based View Maps
DPL0318 Marker 79.61 Cotton - E3 - 15 DPL0318 Marker 42.7 (cM) Automated name-based View Maps
Cotton - HDC - 15 DPL0318 Marker 65.7 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 DPL0318 Marker Cotton 57,829,129 - 57,829,646 (bp) Automated name-based View Maps
DPL0542 Marker 78.79 Cotton - Graimondii_physical - Gr_Chr02 DPL0542 Marker Cotton 57,016,532 - 57,017,203 (bp) Automated name-based View Maps
Cotton - HDC - 15 DPL0542 Marker 66.4 (cM) Automated name-based View Maps
DPL0182 Marker 77.91 Cotton - Graimondii_physical - Gr_Chr02 DPL0182 Marker Cotton 56,980,518 - 56,981,066 (bp) Automated name-based View Maps
Cotton - HDC - 15 DPL0182 Marker 67.3 (cM) Automated name-based View Maps
MUSB0325 Marker 77.14 Cotton - HDC - 15 MUSB0325 Marker 68.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 MUSB0325 Marker Cotton 52,668,750 - 52,669,683 (bp) Automated name-based View Maps
TMB1664 Marker 76.46 Cotton - Graimondii_physical - Gr_Chr01 TMB1664 Marker Cotton 17,373,513 - 17,373,818 (bp) Automated name-based View Maps
Cotton - HDC - 15 TMB1664 Marker 68.6 (cM) Automated name-based View Maps
CIR307 Marker 75.21 Cotton - E3 - 15 CIR307 Marker 57.8 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 CIR307 Marker Cotton 55,891,961 - 55,892,224 (bp) Automated name-based View Maps
Cotton - TH - 15 CIR307 Marker 72.1 (cM) Automated name-based View Maps
Cotton - HDC - 15 CIR307 Marker 69.9 (cM) Automated name-based View Maps
CIR334 Marker 75.17 Cotton - HDC - 15 CIR334 Marker 69.9 (cM) Automated name-based View Maps
TMB1660 Marker 74.94 Cotton - HDC - 15 CLU29 Marker 70.2 (cM) Automated name-based View Maps
TMB0323 Marker 74.51 Cotton - Graimondii_physical - Gr_Chr02 TMB0323 Marker Cotton 56,025,279 - 56,025,963 (bp) Automated name-based View Maps
Cotton - HDC - 15 TMB0323 Marker 70.6 (cM) Automated name-based View Maps
TMF012 Marker 74.25 Cotton - HDC - 15 TMF012 Marker 70.8 (cM) Automated name-based View Maps
TMB0201 Marker 72.86 Cotton - Graimondii_physical - Gr_Chr02 TMB0201 Marker Cotton 55,399,493 - 55,400,224 (bp) Automated name-based View Maps
Cotton - HDC - 15 TMB0201 Marker 72.1 (cM) Automated name-based View Maps
TMG011 Marker 72.28 Cotton - HDC - 15 TMG011 Marker 72.7 (cM) Automated name-based View Maps
MUSB0309 Marker 71.71 Cotton - Graimondii_physical - Gr_Chr08 MUSB0309 Marker Cotton 24,458,907 - 24,460,106 (bp) Automated name-based View Maps
Cotton - HDC - 15 MUSB0309 Marker 73.3 (cM) Automated name-based View Maps
DPL0110 Marker 71.24 Cotton - Graimondii_physical - Gr_Chr02 DPL0110 Marker Cotton 47,251,146 - 47,251,921 (bp) Automated name-based View Maps
Cotton - HDC - 15 DPL0110 Marker 73.8 (cM) Automated name-based View Maps
MUSB1079 Marker 70.71 Cotton - HDC - 15 MUSB1079 Marker 74.2 (cM) Automated name-based View Maps
MUSB0440 Marker 70.46 Cotton - Graimondii_physical - Gr_Chr02 MUSB0440 Marker Cotton 39,248,879 - 39,249,935 (bp) Automated name-based View Maps
Cotton - HDC - 15 MUSB0440 Marker 74.4 (cM) Automated name-based View Maps
MUSB0664 Marker 70.2 Cotton - HDC - 15 MUSB0664 Marker 74.7 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 MUSB0664 Marker Cotton 33,876,109 - 33,876,832 (bp) Automated name-based View Maps
TMB0585 Marker 69.86 Cotton - Graimondii_physical - Gr_Chr02 TMB0585 Marker Cotton 22,110,255 - 22,110,803 (bp) Automated name-based View Maps
Cotton - HDC - 15 TMB0585 Marker 75 (cM) Automated name-based View Maps
BNL0162 Marker 69.14 Cotton - TH - 15 BNL0162 Marker 65.9 (cM) Automated name-based View Maps
Cotton - CH - 15 BNL0162 Marker 70.7 (cM) Automated name-based View Maps
Cotton - E3 - 15 BNL0162 Marker 63.6 (cM) Automated name-based View Maps
Cotton - HDC - 15 BNL0162 Marker 75.8 (cM) Automated name-based View Maps
BNL4082 Marker 68.83 Cotton - Guazuncho2xVH8-BC1 - c15 BNL4082 Marker 91 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 BNL4082 Marker Cotton 42,094,327 - 42,094,871 (bp) Automated name-based View Maps
Cotton - TH - 15 BNL4082 Marker 61.4 (cM) Automated name-based View Maps
Cotton - E3 - 15 BNL4082 Marker 69.7 (cM) Automated name-based View Maps
Cotton - HDC - 15 BNL4082 Marker 76.1 (cM) Automated name-based View Maps
Cotton - CH - 15 BNL4082 Marker 69.4 (cM) Automated name-based View Maps
Cotton - GVc - 15 BNL4082 Marker 53.7 (cM) Automated name-based View Maps
DPL0322 Marker 68.51 Cotton - Graimondii_physical - Gr_Chr02 DPL0322 Marker Cotton 50,015,455 - 50,016,296 (bp) Automated name-based View Maps
Cotton - HDC - 15 DPL0322 Marker 76.3 (cM) Automated name-based View Maps
Cotton - E3 - 15 DPL0322 Marker 62.1 (cM) Automated name-based View Maps
JESPR180 Marker 68.22 Cotton - HDC - 15 JESPR180 Marker 76.6 (cM) Automated name-based View Maps
Cotton - CH - 15 JESPR180 Marker 87.6 (cM) Automated name-based View Maps
Cotton - E3 - 15 JESPR180 Marker 63.9 (cM) Automated name-based View Maps
Cotton - TH - 15 JESPR180 Marker 65.1 (cM) Automated name-based View Maps
JESPR205 Marker 68.11 Cotton - HDC - 15 JESPR205 Marker 76.6 (cM) Automated name-based View Maps
Cotton - E3 - 15 JESPR205 Marker 57.1 (cM) Automated name-based View Maps
Cotton - GVc - 15 JESPR205 Marker 60.3 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c15 JESPR205 Marker 34.88 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c15 JESPR205 Marker 60.6 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 JESPR205 Marker Cotton 48,327,113 - 48,327,693 (bp) Automated name-based View Maps
Cotton - TH - 15 JESPR205 Marker 65.1 (cM) Automated name-based View Maps
TMB0301 Marker 67.87 Cotton - T3 - 1 TMB0301 Marker 71.89 (cM) Automated name-based View Maps
Cotton - HDC - 1 TMB0301 Marker 53.9 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr07 TMB0301 Marker Cotton 17,434,269 - 17,435,012 (bp) Automated name-based View Maps
Cotton - HDC - 15 TMB0301 Marker 76.8 (cM) Automated name-based View Maps