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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set Cotton-T3
(Reference Set)
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Correspondences
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Maps 16
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Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
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Show Labels: None Landmarks All
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Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Image Type: PNG JPEG GIF SVG *
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Size of Dot Plot Pixels: 1
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Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
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Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - T3 [ View Map Set Info ]
Map Name: 16
Map Start: 0 cM
Map Stop: 124.44 cM
Features by Type:
63 Marker
63 Total

Map Features

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Items 1 to 25 of 63.       of 3 | Next
Cotton - T3 - 16
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
UCD154 Marker 0 Cotton - HDC - 16 UCD154 Marker 123.9 (cM) Automated name-based View Maps
DPL0364 Marker 1.25 Cotton - Graimondii_physical - Gr_Chr01 DPL0364 Marker Cotton 559,977 - 560,599 (bp) Automated name-based View Maps
Cotton - HDC - 7 DPL0364 Marker 154.8 (cM) Automated name-based View Maps
Cotton - HDC - 16 DPL0364 Marker 122.7 (cM) Automated name-based View Maps
Cotton - T3 - 7 DPL0364 Marker 5.46 (cM) Automated name-based View Maps
MUSS095 Marker 4.4 Cotton - E3 - 16 MUSS095 Marker 6.7 (cM) Automated name-based View Maps
Cotton - HDC - 16 MUSS095 Marker 119.5 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 MUSS095 Marker Cotton 1,410,728 - 1,411,710 (bp) Automated name-based View Maps
MGHES76 Marker 9.25 Cotton - HDC - 16 MGHES76 Marker 114.7 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 MGHES76 Marker Cotton 1,968,738 - 1,968,946 (bp) Automated name-based View Maps
JESPR292 Marker 23.01 Cotton - GVc - 16 JESPR292 Marker 103.3 (cM) Automated name-based View Maps
Cotton - CH - 16 JESPR292 Marker 57.5 (cM) Automated name-based View Maps
Cotton - TH - 16 JESPR292 Marker 36 (cM) Automated name-based View Maps
Cotton - HDC - 16 JESPR292 Marker 100.9 (cM) Automated name-based View Maps
Cotton - E3 - 16 JESPR292 Marker 45.5 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c16 JESPR292 Marker 181.8 (cM) Automated name-based View Maps
DPL0501 Marker 24.03 Cotton - E3 - 16 DPL0501 Marker 44.3 (cM) Automated name-based View Maps
Cotton - HDC - 16 DPL0501 Marker 100.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 DPL0501 Marker Cotton 4,395,693 - 4,396,267 (bp) Automated name-based View Maps
MGHES58 Marker 26.05 Cotton - HDC - 7 CLU697 Marker 126.2 (cM) Automated name-based View Maps
Cotton - HDC - 16 CLU697 Marker 98.7 (cM) Automated name-based View Maps
Cotton - E3 - 7 MGHES58 Marker 16.1 (cM) Automated name-based View Maps
Cotton - T3 - 7 MGHES58 Marker 32.2 (cM) Automated name-based View Maps
Gh056 Marker 29.24 Cotton - E3 - 16 Gh056 Marker 67.8 (cM) Automated name-based View Maps
Cotton - HDC - 16 Gh056 Marker 96.4 (cM) Automated name-based View Maps
MUSB0812 Marker 30.81 Cotton - HDC - 16 MUSB0812 Marker 95.2 (cM) Automated name-based View Maps
Cotton - HDC - 8 MUSB0812 Marker 8.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 MUSB0812 Marker Cotton 67,844,470 - 67,845,093 (bp) Automated name-based View Maps
Cotton - E3 - 8 MUSB0812 Marker 131.9 (cM) Automated name-based View Maps
Cotton - T3 - 8 MUSB0812 Marker 137.25 (cM) Automated name-based View Maps
MUCS616 Marker 34.4 Cotton - E3 - 16 MUCS616 Marker 67.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 MUCS616 Marker Cotton 7,046,613 - 7,047,923 (bp) Automated name-based View Maps
Cotton - HDC - 16 MUCS616 Marker 92.7 (cM) Automated name-based View Maps
UCcg11051_93 Marker 36.19 Cotton - HDC - 16 UCcg11051_93 Marker 91.5 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 UCcg11051_93 Marker Cotton 6,682,938 - 6,683,040 (bp) Automated name-based View Maps
BNL3793 Marker 37.07 Cotton - HDC - 16 BNL3793 Marker 90.8 (cM) Automated name-based View Maps
Cotton - HDC - 7 BNL3793 Marker 111.9 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 BNL3793 Marker Cotton 6,876,491 - 6,877,038 (bp) Automated name-based View Maps
Cotton - E3 - 16 BNL3793 Marker 65.6 (cM) Automated name-based View Maps
Cotton - T3 - 7 BNL3793 Marker 44.24 (cM) Automated name-based View Maps
Cotton - TH - 7 BNL3793 Marker 39 (cM) Automated name-based View Maps
BNL1531 Marker 37.9 Cotton - HDC - 7 BNL1531 Marker 112.9 (cM) Automated name-based View Maps
Cotton - T3 - 7 BNL1531 Marker 43.29 (cM) Automated name-based View Maps
Cotton - HDC - 16 BNL1531 Marker 90.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 BNL1531 Marker Cotton 7,093,402 - 7,093,765 (bp) Automated name-based View Maps
Gh345 Marker 39.3 Cotton - Graimondii_physical - Gr_Chr01 Gh345 Marker Cotton 7,695,743 - 7,696,229 (bp) Automated name-based View Maps
Cotton - E3 - 16 Gh345 Marker 61 (cM) Automated name-based View Maps
Cotton - HDC - 16 Gh345 Marker 89.1 (cM) Automated name-based View Maps
BNL2634 Marker 41.55 Cotton - CH - 16 BNL2634 Marker 80.4 (cM) Automated name-based View Maps
Cotton - HDC - 16 BNL2634 Marker 87.5 (cM) Automated name-based View Maps
JESPR222 Marker 41.98 Cotton - HDC - 16 JESPR222 Marker 87.2 (cM) Automated name-based View Maps
CIR107 Marker 43.12 Cotton - GVc - 16 CIR107 Marker 89.6 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c16 CIR107 Marker 41.89 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c16 CIR107 Marker 165.6 (cM) Automated name-based View Maps
Cotton - CH - 16 CIR107 Marker 78.2 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 CIR107 Marker Cotton 8,839,579 - 8,839,829 (bp) Automated name-based View Maps
Cotton - E3 - 16 CIR107 Marker 72.3 (cM) Automated name-based View Maps
Cotton - HDC - 16 CIR107 Marker 86.4 (cM) Automated name-based View Maps
DPL0511 Marker 44.32 Cotton - Graimondii_physical - Gr_Chr01 DPL0511 Marker Cotton 9,768,339 - 9,768,953 (bp) Automated name-based View Maps
Cotton - HDC - 16 DPL0511 Marker 85.1 (cM) Automated name-based View Maps
Cotton - E3 - 16 DPL0511 Marker 73.2 (cM) Automated name-based View Maps
MUCS594 Marker 45.27 Cotton - HDC - 16 CLU622 Marker 84.2 (cM) Automated name-based View Maps
NAU2002 Marker 46.28 Cotton - TH - 7 NAU2002 Marker 49.2 (cM) Automated name-based View Maps
Cotton - HDC - 16 CLU1166 Marker 83.2 (cM) Automated name-based View Maps
Cotton - HDC - 7 CLU1166 Marker 99.9 (cM) Automated name-based View Maps
Cotton - HDC - 8 CLU1166 Marker 65.4 (cM) Automated name-based View Maps
Cotton - T3 - 7 NAU2002 Marker 53.71 (cM) Automated name-based View Maps
JESPR102 Marker 47.06 Cotton - GVc - 15 JESPR102 Marker 67.3 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c16 JESPR102 Marker 127.5 (cM) Automated name-based View Maps
Cotton - CH - 16 JESPR102 Marker 75.7 (cM) Automated name-based View Maps
Cotton - TH - 16 JESPR102 Marker 63.8 (cM) Automated name-based View Maps
Cotton - HDC - 15 CLU303 Marker 80.2 (cM) Automated name-based View Maps
Cotton - E3 - 16 JESPR102 Marker 74.4 (cM) Automated name-based View Maps
Cotton - GVc - 16 JESPR102 Marker 78 (cM) Automated name-based View Maps
Cotton - HDC - 16 CLU303 Marker 75.7 (cM) Automated name-based View Maps
Cotton - HDC - 16 CLU303 Marker 61.4 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c15 JESPR102 Marker 101.2 (cM) Automated name-based View Maps
Gh684 Marker 47.19 Cotton - HDC - 16 CLU303 Marker 61.4 (cM) Automated name-based View Maps
Cotton - E3 - 16 Gh684 Marker 89.9 (cM) Automated name-based View Maps
Cotton - HDC - 16 CLU303 Marker 75.7 (cM) Automated name-based View Maps
Cotton - HDC - 15 CLU303 Marker 80.2 (cM) Automated name-based View Maps
Gh295 Marker 48.15 Cotton - HDC - 15 CLU303 Marker 80.2 (cM) Automated name-based View Maps
Cotton - HDC - 16 CLU303 Marker 75.7 (cM) Automated name-based View Maps
Cotton - HDC - 16 CLU303 Marker 61.4 (cM) Automated name-based View Maps
BNL3008 Marker 49.75 Cotton - TH - 16 BNL3008 Marker 63.2 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c16 BNL3008 Marker 127.5 (cM) Automated name-based View Maps
Cotton - E3 - 16 BNL3008 Marker 74.4 (cM) Automated name-based View Maps
Cotton - GVc - 16 BNL3008 Marker 78.6 (cM) Automated name-based View Maps
Cotton - HDC - 16 BNL3008 Marker 79.7 (cM) Automated name-based View Maps
Cotton - PK - c16 BNL3008 Marker 81.5 (cM) Automated name-based View Maps
Cotton - CH - 16 BNL3008 Marker 69 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 BNL3008 Marker Cotton 12,327,665 - 12,327,992 (bp) Automated name-based View Maps
MUSB1181 Marker 50.7 Cotton - HDC - 7 MUSB1181 Marker 131.1 (cM) Automated name-based View Maps
Cotton - HDC - 16 MUSB1181 Marker 57.9 (cM) Automated name-based View Maps
Cotton - HDC - 16 MUSB1181 Marker 78.6 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 MUSB1181 Marker Cotton 12,357,477 - 12,358,278 (bp) Automated name-based View Maps
Cotton - T3 - 7 MUSB1181 Marker 27.97 (cM) Automated name-based View Maps