CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cotton-T3
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 1
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - T3 [ View Map Set Info ]
Map Name: 1
Map Start: 0 cM
Map Stop: 144.38 cM
Features by Type:
65 Marker
65 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 65.       of 3 | Next
Cotton - T3 - 1
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
NAU2083 Marker 0 Cotton - HDC - 15 CLU1349 Marker 129.5 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c1 NAU2083 Marker 97.91 (cM) Automated name-based View Maps
Cotton - TH - 1 NAU2083 Marker 29.7 (cM) Automated name-based View Maps
Cotton - HDC - 8 CLU1349 Marker 94 (cM) Automated name-based View Maps
Cotton - HDC - 1 CLU1349 Marker 115.1 (cM) Automated name-based View Maps
Cotton - GVc - 1 NAU2083 Marker 114 (cM) Automated name-based View Maps
BNL2599 Marker 1.63 Cotton - HDC - 1 BNL2599 Marker 114.3 (cM) Automated name-based View Maps
Cotton - E3 - 1 BNL2599 Marker 81.2 (cM) Automated name-based View Maps
Gh075 Marker 3.98 Cotton - Graimondii_physical - Gr_Chr02 Gh075 Marker Cotton 2,146,477 - 2,147,009 (bp) Automated name-based View Maps
Cotton - HDC - 1 Gh075 Marker 113.1 (cM) Automated name-based View Maps
Cotton - E3 - 1 Gh075 Marker 83.2 (cM) Automated name-based View Maps
UCcg10814_210 Marker 13.4 Cotton - Graimondii_physical - Gr_Chr02 UCcg10814_210 Marker Cotton 1,109,984 - 1,110,086 (bp) Automated name-based View Maps
Cotton - HDC - 1 UCcg10814_210 Marker 109.3 (cM) Automated name-based View Maps
UCcg10817_154 Marker 14.85 Cotton - HDC - 1 UCcg10817_154 Marker 108.6 (cM) Automated name-based View Maps
BNL3580 Marker 23.15 Cotton - TH - 1 BNL3580 Marker 49.1 (cM) Automated name-based View Maps
Cotton - CH - 1 BNL3580 Marker 113.1 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c1 BNL3580 Marker 196.3 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - c1 BNL3580 Marker 108.7 (cM) Automated name-based View Maps
Cotton - HDC - 1 CLU42 Marker 105.1 (cM) Automated name-based View Maps
Cotton - GVc - 1 BNL3580 Marker 107 (cM) Automated name-based View Maps
Cotton - E3 - 1 BNL3580 Marker 52.2 (cM) Automated name-based View Maps
CIR114 Marker 25.7 Cotton - GVc - 1 CIR114 Marker 104.6 (cM) Automated name-based View Maps
Cotton - HDC - 1 CIR114 Marker 102.6 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c1 CIR114 Marker 196.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 CIR114 Marker Cotton 8,053,263 - 8,053,746 (bp) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c1 CIR114 Marker 82.11 (cM) Automated name-based View Maps
MUSS128 Marker 28.12 Cotton - HDC - 1 CLU512 Marker 100.6 (cM) Automated name-based View Maps
Cotton - E3 - 15 MUSS128 Marker 109.3 (cM) Automated name-based View Maps
Cotton - HDC - 15 CLU512 Marker 106.1 (cM) Automated name-based View Maps
TMB0409 Marker 30.74 Cotton - HDC - 1 TMB0409 Marker 98.3 (cM) Automated name-based View Maps
BNL3848 Marker 32.01 Cotton - HDC - 1 BNL3848 Marker 97.3 (cM) Automated name-based View Maps
Cotton - TH - 1 BNL3848 Marker 46.6 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 BNL3848 Marker Cotton 9,809,129 - 9,809,614 (bp) Automated name-based View Maps
Gh128 Marker 33.01 Cotton - Graimondii_physical - Gr_Chr04 Gh128 Marker Cotton 33,225,659 - 33,226,353 (bp) Automated name-based View Maps
Cotton - E3 - 24 Gh128 Marker 33.7 (cM) Automated name-based View Maps
Cotton - HDC - 24 Gh128 Marker 97.5 (cM) Automated name-based View Maps
Cotton - HDC - 1 Gh128 Marker 96.4 (cM) Automated name-based View Maps
TMB0119 Marker 34.09 Cotton - Graimondii_physical - Gr_Chr02 TMB0119 Marker Cotton 10,175,584 - 10,176,235 (bp) Automated name-based View Maps
Cotton - HDC - 1 TMB0119 Marker 95.5 (cM) Automated name-based View Maps
Cotton - T3 - 15 TMB0119 Marker 42.66 (cM) Automated name-based View Maps
Cotton - HDC - 15 TMB0119 Marker 104.1 (cM) Automated name-based View Maps
TMB1224 Marker 34.49 Cotton - HDC - 1 CLU238 Marker 95.1 (cM) Automated name-based View Maps
BNL1667 Marker 34.76 Cotton - CH - 15 BNL1667 Marker 122.4 (cM) Automated name-based View Maps
Cotton - HDC - 1 CLU14 Marker 94.9 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c15 BNL1667 Marker 137.6 (cM) Automated name-based View Maps
Cotton - E3 - 15 BNL1667 Marker 109.6 (cM) Automated name-based View Maps
Cotton - CH - 1 BNL1667 Marker 97.4 (cM) Automated name-based View Maps
Cotton - TH - 15 BNL1667 Marker 48.8 (cM) Automated name-based View Maps
Cotton - GVc - 15 BNL1667 Marker 97.4 (cM) Automated name-based View Maps
Cotton - PK - c2 BNL1667 Marker 87.7 (cM) Automated name-based View Maps
Cotton - PK - c2 BNL1667 Marker 85.9 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - c15 BNL1667 Marker 88.5 (cM) Automated name-based View Maps
Cotton - HDC - 22 CLU14 Marker 55.2 (cM) Automated name-based View Maps
Cotton - HDC - 15 CLU14 Marker 106.1 (cM) Automated name-based View Maps
Cotton - HDC - 14 CLU14 Marker 75.5 (cM) Automated name-based View Maps
Cotton - T3 - 15 BNL1667 Marker 41.51 (cM) Automated name-based View Maps
Cotton - HDC - 2 CLU14 Marker 64.4 (cM) Automated name-based View Maps
Cotton - HDC - 17 CLU14 Marker 74.4 (cM) Automated name-based View Maps
Cotton - PK - c14 BNL1667 Marker 73.4 (cM) Automated name-based View Maps
MUSB1064 Marker 37.03 Cotton - HDC - 10 MUSB1064 Marker 81.7 (cM) Automated name-based View Maps
Cotton - HDC - 1 MUSB1064 Marker 93 (cM) Automated name-based View Maps
Cotton - HDC - 6 MUSB1064 Marker 87.4 (cM) Automated name-based View Maps
Cotton - E3 - 6 MUSB1064 Marker 94.8 (cM) Automated name-based View Maps
Cotton - T3 - 10 MUSB1064 Marker 62.18 (cM) Automated name-based View Maps
TMB0283 Marker 38.98 Cotton - HDC - 15 TMB0283 Marker 100.8 (cM) Automated name-based View Maps
Cotton - T3 - 15 TMB0283 Marker 44.69 (cM) Automated name-based View Maps
Cotton - HDC - 1 TMB0283 Marker 91.3 (cM) Automated name-based View Maps
UCcg11166_953 Marker 38.98 Cotton - Graimondii_physical - Gr_Chr02 UCcg11166_953 Marker Cotton 11,263,291 - 11,263,393 (bp) Automated name-based View Maps
Cotton - HDC - 1 UCcg11166_953 Marker 91.3 (cM) Automated name-based View Maps
TMB1181 Marker 39.4 Cotton - HDC - 1 CLU105 Marker 90.9 (cM) Automated name-based View Maps
Cotton - HDC - 15 CLU105 Marker 100.3 (cM) Automated name-based View Maps
Cotton - HDC - 24 CLU105 Marker 115.6 (cM) Automated name-based View Maps
Cotton - T3 - 15 TMB1181 Marker 45.02 (cM) Automated name-based View Maps
BNL3888 Marker 41.27 Cotton - TH - 1 BNL3888 Marker 60.7 (cM) Automated name-based View Maps
Cotton - PK - c14 BNL3888 Marker 62.1 (cM) Automated name-based View Maps
Cotton - HDC - 1 BNL3888 Marker 89.3 (cM) Automated name-based View Maps
Cotton - GVc - 1 BNL3888 Marker 93.6 (cM) Automated name-based View Maps
Cotton - PK - c1 BNL3888 Marker 131.6 (cM) Automated name-based View Maps
Cotton - CH - 1 BNL3888 Marker 92.1 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c1 BNL3888 Marker 76.29 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c1 BNL3888 Marker 185.5 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - c1 BNL3888 Marker 96.7 (cM) Automated name-based View Maps
Cotton - E3 - 1 BNL3888 Marker 43.9 (cM) Automated name-based View Maps
Cotton - HDC - 14 BNL3888 Marker 83.6 (cM) Automated name-based View Maps
CIR089 Marker 44.22 Cotton - HDC - 1 CIR089 Marker 85.2 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 CIR089 Marker Cotton 16,149,816 - 16,150,000 (bp) Automated name-based View Maps
Cotton - GVc - 1 CIR089 Marker 72.5 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c1 CIR089 Marker 159.6 (cM) Automated name-based View Maps
BNL3090 Marker 47.64 Cotton - HDC - 15 BNL3090 Marker 90.8 (cM) Automated name-based View Maps
Cotton - TH - 15 BNL3090 Marker 54.7 (cM) Automated name-based View Maps
Cotton - T3 - 15 BNL3090 Marker 51.86 (cM) Automated name-based View Maps
Cotton - TH - 1 BNL3090 Marker 63.6 (cM) Automated name-based View Maps
Cotton - GVc - 15 BNL3090 Marker 79.3 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - c15 BNL3090 Marker 69.9 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c1 BNL3090 Marker 168.7 (cM) Automated name-based View Maps
Cotton - E3 - 1 BNL3090 Marker 29.8 (cM) Automated name-based View Maps
Cotton - HDC - 16 BNL3090 Marker 47.9 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - c1 BNL3090 Marker 86.1 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c15 BNL3090b Marker 47.81 (cM) Automated name-based View Maps
Cotton - CH - 15 BNL3090 Marker 105.5 (cM) Automated name-based View Maps
Cotton - CH - 15 BNL3090 Marker 111.6 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c1 BNL3090a Marker 66.28 (cM) Automated name-based View Maps
Cotton - HDC - 15 BNL3090 Marker 87.5 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c15 BNL3090 Marker 115.9 (cM) Automated name-based View Maps
Cotton - PK - c16 BNL3090 Marker 52.8 (cM) Automated name-based View Maps
Cotton - E3 - 15 BNL3090 Marker 95.1 (cM) Automated name-based View Maps
Cotton - HDC - 1 BNL3090 Marker 80.2 (cM) Automated name-based View Maps
Cotton - GVc - 1 BNL3090 Marker 79.4 (cM) Automated name-based View Maps
Cotton - PK - c15 BNL3090 Marker 89.5 (cM) Automated name-based View Maps
DPL0094 Marker 48.67 Cotton - E3 - 1 DPL0094 Marker 30.6 (cM) Automated name-based View Maps
Cotton - HDC - 1 DPL0094 Marker 79.2 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 DPL0094 Marker Cotton 13,623,674 - 13,624,390 (bp) Automated name-based View Maps
UCcg10174_221 Marker 49.23 Cotton - HDC - 1 UCcg10174_221 Marker 78.6 (cM) Automated name-based View Maps
DPL0370 Marker 51.77 Cotton - HDC - 1 DPL0370 Marker 75.9 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 DPL0370 Marker Cotton 16,205,473 - 16,206,134 (bp) Automated name-based View Maps
TMB0062 Marker 52.59 Cotton - E3 - 1 TMB0062 Marker 29.7 (cM) Automated name-based View Maps
Cotton - HDC - 1 TMB0062 Marker 75 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 TMB0062 Marker Cotton 15,260,015 - 15,260,793 (bp) Automated name-based View Maps