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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cotton-T3
(Reference Set)
Min.
Correspondences
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Stack
Maps 4
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - T3 [ View Map Set Info ]
Map Name: 4
Map Start: 0 cM
Map Stop: 101.58 cM
Features by Type:
53 Marker
53 Total

Map Features

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Items 1 to 25 of 53.       of 3 | Next
Cotton - T3 - 4
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
MUSB0264 Marker 0 Cotton - Graimondii_physical - Gr_Chr09 MUSB0264 Marker Cotton 68,761,976 - 68,762,718 (bp) Automated name-based View Maps
Cotton - HDC - 4 MUSB0264 Marker 0.7 (cM) Automated name-based View Maps
BNL3089 Marker 13.66 Cotton - TH - 4 BNL3089 Marker 0 (cM) Automated name-based View Maps
Cotton - E3 - 4 BNL3089 Marker 137.3 (cM) Automated name-based View Maps
Cotton - HDC - 4 BNL3089 Marker 14.4 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 BNL3089 Marker Cotton 69,826,068 - 69,826,391 (bp) Automated name-based View Maps
UCcg11185_886 Marker 16.91 Cotton - HDC - 4 UCcg11185_886 Marker 17.6 (cM) Automated name-based View Maps
DPL0573 Marker 23.88 Cotton - Graimondii_physical - Gr_Chr09 DPL0573 Marker Cotton 67,434,741 - 67,435,539 (bp) Automated name-based View Maps
Cotton - E3 - 4 DPL0573 Marker 113.8 (cM) Automated name-based View Maps
Cotton - HDC - 4 DPL0573 Marker 24.6 (cM) Automated name-based View Maps
UCcg11256_182 Marker 28.88 Cotton - HDC - 4 UCcg11256_182 Marker 29.6 (cM) Automated name-based View Maps
UCcot10520_501 Marker 30.43 Cotton - Graimondii_physical - Gr_Chr09 UCcot10520_501 Marker Cotton 67,892,553 - 67,892,655 (bp) Automated name-based View Maps
Cotton - HDC - 4 UCcot10520_501 Marker 31.1 (cM) Automated name-based View Maps
UCcg10883_389 Marker 32.92 Cotton - HDC - 4 UCcg10883_389 Marker 33.6 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 UCcg10883_389 Marker Cotton 52,988,020 - 52,988,122 (bp) Automated name-based View Maps
DOW071 Marker 35.04 Cotton - HDC - 4 DOW071 Marker 35.7 (cM) Automated name-based View Maps
MUSS396 Marker 38.29 Cotton - HDC - 4 CLU759 Marker 39 (cM) Automated name-based View Maps
Cotton - T3 - 22 MUSS396 Marker 49.8 (cM) Automated name-based View Maps
Cotton - HDC - 22 CLU759 Marker 42.9 (cM) Automated name-based View Maps
Gh107 Marker 39.67 Cotton - E3 - 4 Gh107 Marker 104.2 (cM) Automated name-based View Maps
Cotton - HDC - 4 CLU229 Marker 40.4 (cM) Automated name-based View Maps
Gh124 Marker 41.4 Cotton - HDC - 4 Gh124 Marker 42.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 Gh124 Marker Cotton 47,435,795 - 47,436,550 (bp) Automated name-based View Maps
Cotton - E3 - 4 Gh124 Marker 89.8 (cM) Automated name-based View Maps
DOW038 Marker 42.3 Cotton - HDC - 4 DOW038 Marker 43 (cM) Automated name-based View Maps
DPL0299 Marker 43.62 Cotton - HDC - 4 DPL0299 Marker 44.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 DPL0299 Marker Cotton 54,583,536 - 54,584,236 (bp) Automated name-based View Maps
Cotton - E3 - 4 DPL0299 Marker 91.3 (cM) Automated name-based View Maps
UCcg10896_208 Marker 45.1 Cotton - Graimondii_physical - Gr_Chr09 UCcg10896_208 Marker Cotton 47,906,924 - 47,907,026 (bp) Automated name-based View Maps
Cotton - HDC - 4 UCcg10896_208 Marker 45.8 (cM) Automated name-based View Maps
BNL1167 Marker 45.68 Cotton - HDC - 4 BNL1167 Marker 46.4 (cM) Automated name-based View Maps
UCcot10251_72 Marker 46.34 Cotton - Graimondii_physical - Gr_Chr12 UCcot10251_72 Marker Cotton 21,120,909 - 21,121,011 (bp) Automated name-based View Maps
Cotton - HDC - 4 UCcot10251_72 Marker 47 (cM) Automated name-based View Maps
TMB0809 Marker 46.42 Cotton - Graimondii_physical - Gr_Chr09 TMB0809 Marker Cotton 54,773,953 - 54,774,564 (bp) Automated name-based View Maps
Cotton - HDC - 4 TMB0809 Marker 47.1 (cM) Automated name-based View Maps
DPL0273 Marker 47.11 Cotton - Graimondii_physical - Gr_Chr09 DPL0273 Marker Cotton 56,385,352 - 56,385,771 (bp) Automated name-based View Maps
Cotton - E3 - 4 DPL0273 Marker 86.8 (cM) Automated name-based View Maps
Cotton - HDC - 4 DPL0273 Marker 47.8 (cM) Automated name-based View Maps
UCcg10488_64 Marker 47.35 Cotton - HDC - 4 UCcg10488_64 Marker 48 (cM) Automated name-based View Maps
BNL1044 Marker 48.1 Cotton - HDC - 4 BNL1044 Marker 48.8 (cM) Automated name-based View Maps
Cotton - HDC - 6 BNL1044 Marker 87.4 (cM) Automated name-based View Maps
Cotton - TH - 8 BNL1044 Marker 60.3 (cM) Automated name-based View Maps
Cotton - T3 - 6 BNL1044 Marker 55.63 (cM) Automated name-based View Maps
Cotton - T3 - 8 BNL1044 Marker 79.51 (cM) Automated name-based View Maps
Cotton - CH - 8 BNL1044 Marker 96.5 (cM) Automated name-based View Maps
Cotton - HDC - 8 BNL1044 Marker 73.1 (cM) Automated name-based View Maps
Cotton - HDC - 5 BNL1044 Marker 111.3 (cM) Automated name-based View Maps
Cotton - E3 - 8 BNL1044 Marker 71.2 (cM) Automated name-based View Maps
Cotton - T3 - 5 BNL1044 Marker 33.61 (cM) Automated name-based View Maps
MUSS027 Marker 49.92 Cotton - HDC - 4 MUSS027 Marker 50.6 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr12 MUSS027 Marker Cotton 23,120,297 - 23,120,730 (bp) Automated name-based View Maps
Cotton - HDC - 22 MUSS027 Marker 51.1 (cM) Automated name-based View Maps
Cotton - T3 - 22 MUSS027 Marker 58.77 (cM) Automated name-based View Maps
DOW069 Marker 50.51 Cotton - HDC - 4 DOW069 Marker 51.2 (cM) Automated name-based View Maps
UCcg11310_419 Marker 52.1 Cotton - HDC - 4 UCcg11310_419 Marker 52.8 (cM) Automated name-based View Maps
UCcg11310_334 Marker 52.29 Cotton - Graimondii_physical - Gr_Chr12 UCcg11310_334 Marker Cotton 25,119,142 - 25,119,244 (bp) Automated name-based View Maps
Cotton - HDC - 4 UCcg11310_334 Marker 53 (cM) Automated name-based View Maps
UCcot10213_226 Marker 52.3 Cotton - HDC - 4 UCcot10213_226 Marker 53 (cM) Automated name-based View Maps