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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set Cotton-T3
(Reference Set)
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Correspondences
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Maps 5
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
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Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - T3 [ View Map Set Info ]
Map Name: 5
Map Start: 0 cM
Map Stop: 199.19 cM
Features by Type:
135 Marker
135 Total

Map Features

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Items 1 to 25 of 135.       of 6 | Next
Cotton - T3 - 5
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
UCcg10440_267 Marker 43.82 Cotton - HDC - 5 UCcg10440_267 Marker 108.5 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 UCcg10440_267 Marker Cotton 7,132,965 - 7,133,067 (bp) Automated name-based View Maps
Gh252 Marker 136.46 Cotton - HDC - 5 CLU252 Marker 38.6 (cM) Automated name-based View Maps
Cotton - T3 - 22 Gh252 Marker 52.05 (cM) Automated name-based View Maps
Cotton - HDC - 13 CLU252 Marker 72.4 (cM) Automated name-based View Maps
Cotton - HDC - 22 CLU252 Marker 45.1 (cM) Automated name-based View Maps
BNL4071 Marker 43.34 Cotton - Graimondii_physical - Gr_Chr09 BNL4071 Marker Cotton 7,131,232 - 7,131,564 (bp) Automated name-based View Maps
Cotton - E3 - 19 BNL4071 Marker 69.3 (cM) Automated name-based View Maps
Cotton - CH - 5 BNL4071 Marker 184.2 (cM) Automated name-based View Maps
Cotton - T3 - 19 BNL4071 Marker 44.66 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c5 BNL4071a Marker 17.65 (cM) Automated name-based View Maps
Cotton - HDC - 19 BNL4071 Marker 138.4 (cM) Automated name-based View Maps
Cotton - HDC - 5 BNL4071 Marker 108.6 (cM) Automated name-based View Maps
MUSB1051 Marker 135.61 Cotton - HDC - 5 MUSB1051 Marker 39.6 (cM) Automated name-based View Maps
DOW014 Marker 42.04 Cotton - HDC - 5 DOW014 Marker 109.1 (cM) Automated name-based View Maps
DPL0837 Marker 134.95 Cotton - HDC - 5 DPL0837 Marker 40.2 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr12 DPL0837 Marker Cotton 10,192,920 - 10,193,677 (bp) Automated name-based View Maps
Cotton - E3 - 5 DPL0837 Marker 199.5 (cM) Automated name-based View Maps
DPL0838 Marker 40.12 Cotton - E3 - 5 DPL0838 Marker 69.8 (cM) Automated name-based View Maps
Cotton - E3 - 26 DPL0838 Marker 29.7 (cM) Automated name-based View Maps
Cotton - HDC - 26 DPL0838 Marker 59.4 (cM) Automated name-based View Maps
Cotton - HDC - 5 DPL0838 Marker 109.6 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 DPL0838 Marker Cotton 6,478,203 - 6,478,709 (bp) Automated name-based View Maps
MUSB0592 Marker 134.19 Cotton - HDC - 5 MUSB0592 Marker 41.1 (cM) Automated name-based View Maps
UCcg11199_82 Marker 34.97 Cotton - Graimondii_physical - Gr_Chr09 UCcg11199_82 Marker Cotton 5,605,897 - 5,605,999 (bp) Automated name-based View Maps
Cotton - HDC - 5 UCcg11199_82 Marker 110.9 (cM) Automated name-based View Maps
NAU1172 Marker 133.57 Cotton - HDC - 5 NAU1172 Marker 41.8 (cM) Automated name-based View Maps
DPL0594 Marker 34.75 Cotton - E3 - 19 DPL0594 Marker 61.5 (cM) Automated name-based View Maps
Cotton - HDC - 19 DPL0594 Marker 146.1 (cM) Automated name-based View Maps
Cotton - T3 - 19 DPL0594 Marker 37.99 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 DPL0594 Marker Cotton 5,620,079 - 5,620,562 (bp) Automated name-based View Maps
Cotton - HDC - 5 DPL0594 Marker 110.9 (cM) Automated name-based View Maps
NAU1127 Marker 133.35 Cotton - TH - 5 NAU1127 Marker 151.9 (cM) Automated name-based View Maps
Cotton - HDC - 5 CLU1691 Marker 42 (cM) Automated name-based View Maps
BNL1044 Marker 33.61 Cotton - CH - 8 BNL1044 Marker 96.5 (cM) Automated name-based View Maps
Cotton - HDC - 8 BNL1044 Marker 73.1 (cM) Automated name-based View Maps
Cotton - HDC - 4 BNL1044 Marker 48.8 (cM) Automated name-based View Maps
Cotton - T3 - 4 BNL1044 Marker 48.1 (cM) Automated name-based View Maps
Cotton - HDC - 5 BNL1044 Marker 111.3 (cM) Automated name-based View Maps
Cotton - T3 - 8 BNL1044 Marker 79.51 (cM) Automated name-based View Maps
Cotton - T3 - 6 BNL1044 Marker 55.63 (cM) Automated name-based View Maps
Cotton - TH - 8 BNL1044 Marker 60.3 (cM) Automated name-based View Maps
Cotton - HDC - 6 BNL1044 Marker 87.4 (cM) Automated name-based View Maps
Cotton - E3 - 8 BNL1044 Marker 71.2 (cM) Automated name-based View Maps
BNL3241 Marker 132.27 Cotton - HDC - 5 BNL3241 Marker 43.2 (cM) Automated name-based View Maps
Cotton - TH - 5 BNL3241 Marker 152.1 (cM) Automated name-based View Maps
DPL0022 Marker 32.13 Cotton - Graimondii_physical - Gr_Chr09 DPL0022 Marker Cotton 4,986,805 - 4,987,450 (bp) Automated name-based View Maps
Cotton - HDC - 5 DPL0022 Marker 111.8 (cM) Automated name-based View Maps
TMB1314 Marker 131.9 Cotton - HDC - 3 TMB1314 Marker 60.1 (cM) Automated name-based View Maps
Cotton - HDC - 5 TMB1314 Marker 43.6 (cM) Automated name-based View Maps
Cotton - T3 - 3 TMB1314 Marker 50.93 (cM) Automated name-based View Maps
CIR126 Marker 28.47 Cotton - HDC - 5 CIR126 Marker 112.8 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 CIR126 Marker Cotton 4,447,618 - 4,448,036 (bp) Automated name-based View Maps
DPL0637 Marker 131.6 Cotton - E3 - 5 DPL0637 Marker 193.5 (cM) Automated name-based View Maps
Cotton - HDC - 5 CLU167 Marker 44 (cM) Automated name-based View Maps
MUCS045 Marker 27.92 Cotton - HDC - 5 CLU1470 Marker 113.1 (cM) Automated name-based View Maps
Cotton - HDC - 18 CLU1470 Marker 58.5 (cM) Automated name-based View Maps
Cotton - HDC - 16 CLU208 Marker 101.5 (cM) Automated name-based View Maps
Cotton - HDC - 5 CLU208 Marker 113.4 (cM) Automated name-based View Maps
DPL0810 Marker 130.99 Cotton - Graimondii_physical - Gr_Chr12 DPL0810 Marker Cotton 15,243,921 - 15,244,502 (bp) Automated name-based View Maps
Cotton - HDC - 5 DPL0810 Marker 44.6 (cM) Automated name-based View Maps
Cotton - E3 - 5 DPL0810 Marker 192.7 (cM) Automated name-based View Maps
MUSS173 Marker 27.84 Cotton - HDC - 5 MUSS173 Marker 113 (cM) Automated name-based View Maps
BNL3995 Marker 130.17 Cotton - Graimondii_physical - Gr_Chr12 BNL3995 Marker Cotton 15,134,435 - 15,134,833 (bp) Automated name-based View Maps
Cotton - HDC - 5 BNL3995 Marker 45.5 (cM) Automated name-based View Maps
Cotton - CH - 5 BNL3995 Marker 74.2 (cM) Automated name-based View Maps
Cotton - TH - 5 BNL3995 Marker 151.3 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c5 BNL3995 Marker 258.5 (cM) Automated name-based View Maps
Cotton - GVc - 5 BNL3995 Marker 95.3 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c5 BNL3995 Marker 78.74 (cM) Automated name-based View Maps
BNL3452 Marker 22.74 Cotton - Guazuncho2xVH8-RIL - c19 BNL3452 Marker 8.09 (cM) Automated name-based View Maps
Cotton - E3 - 19 BNL3452 Marker 35.8 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - D08 BNL3452 Marker 31.5 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - D08 BNL3452 Marker 13.1 (cM) Automated name-based View Maps
Cotton - TH - 19 BNL3452 Marker 22.8 (cM) Automated name-based View Maps
Cotton - CH - 19 BNL3452 Marker 196.4 (cM) Automated name-based View Maps
Cotton - HDC - 19 CLU37 Marker 163.5 (cM) Automated name-based View Maps
Cotton - T3 - 19 BNL3452 Marker 22.59 (cM) Automated name-based View Maps
Cotton - TH - 5 BNL3452 Marker 24 (cM) Automated name-based View Maps
Cotton - GVc - 19 BNL3452 Marker 25.7 (cM) Automated name-based View Maps
Cotton - PK - D08 BNL3452 Marker 26.5 (cM) Automated name-based View Maps
Cotton - HDC - 5 CLU37 Marker 114.2 (cM) Automated name-based View Maps
JESPR042 Marker 128.76 Cotton - HDC - 5 JESPR042 Marker 46.8 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 JESPR042 Marker Cotton 31,365,032 - 31,365,271 (bp) Automated name-based View Maps
CIR005 Marker 22.36 Cotton - Graimondii_physical - Gr_Chr09 CIR005 Marker Cotton 3,512,793 - 3,513,131 (bp) Automated name-based View Maps
Cotton - HDC - 5 CIR005 Marker 114.3 (cM) Automated name-based View Maps