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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cotton-TH
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 3
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - TH [ View Map Set Info ]
Map Name: 3
Map Start: 0 cM
Map Stop: 103.9 cM
Features by Type:
59 Marker
59 Total

Map Features

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Items 1 to 25 of 59.       of 3 | Next
Cotton - TH - 3
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
NAU3241 Marker 17.5 Cotton - HDC - 14 CLU4293 Marker 52.6 (cM) Automated name-based View Maps
MUSS162 Marker 15.1 Cotton - HDC - 3 MUSS162 Marker 46.9 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr05 MUSS162 Marker Cotton 58,754,606 - 58,755,086 (bp) Automated name-based View Maps
Cotton - E3 - 3 MUSS162 Marker 110.6 (cM) Automated name-based View Maps
Cotton - T3 - 3 MUSS162 Marker 37.02 (cM) Automated name-based View Maps
BNL0226 Marker 16.7 Cotton - GVc - 14 BNL0226 Marker 78.7 (cM) Automated name-based View Maps
Cotton - CH - 14 BNL0226 Marker 130.8 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c3 BNL226 Marker 82.5 (cM) Automated name-based View Maps
Cotton - HDC - 14 BNL0226 Marker 53.5 (cM) Automated name-based View Maps
Cotton - GVc - 3 BNL0226 Marker 62.6 (cM) Automated name-based View Maps
Cotton - PK - c3 BNL0226 Marker 96.9 (cM) Automated name-based View Maps
Cotton - T3 - 3 BNL0226 Marker 46.98 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr05 BNL0226 Marker Cotton 53,481,303 - 53,481,585 (bp) Automated name-based View Maps
Cotton - E3 - 3 BNL0226 Marker 104.2 (cM) Automated name-based View Maps
Cotton - HDC - 3 BNL0226 Marker 55.9 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - c14 BNL226 Marker 99 (cM) Automated name-based View Maps
Cotton - PK - c14 BNL0226 Marker 120 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c14 BNL226 Marker 99.3 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c3 BNL0226b Marker 42.12 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c14 BNL0226a Marker 68.19 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - c3 BNL226 Marker 67.6 (cM) Automated name-based View Maps
CIR332 Marker 14.5 Cotton - Graimondii_physical - Gr_Chr05 CIR332 Marker Cotton 5,247,490 - 5,248,051 (bp) Automated name-based View Maps
Cotton - T3 - 3 CIR332 Marker 36.85 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c3 CIR332 Marker 95.8 (cM) Automated name-based View Maps
Cotton - HDC - 3 CIR332 Marker 46.8 (cM) Automated name-based View Maps
Cotton - GVc - 3 CIR332 Marker 74 (cM) Automated name-based View Maps
NAU3671 Marker 12.3 Cotton - E3 - 3 NAU3671 Marker 81.9 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr05 NAU3671 Marker Cotton 19,748,429 - 19,749,188 (bp) Automated name-based View Maps
Cotton - HDC - 3 NAU3671 Marker 80 (cM) Automated name-based View Maps
NAU6584 Marker 8.6 Cotton - HDC - 15 NAU6584 Marker 70.1 (cM) Automated name-based View Maps
Cotton - TH - 15 NAU6584 Marker 69 (cM) Automated name-based View Maps
me5em3-250 Marker 11 No other positions
E13M14-160 Marker 7.6 No other positions
me1GA38-170 Marker 0 No other positions
E8M13-200 Marker 5.5 No other positions
NAU3083 Marker 103.9 Cotton - HDC - 3 CLU1778 Marker 159.4 (cM) Automated name-based View Maps
Cotton - E3 - 3 NAU3083 Marker 0 (cM) Automated name-based View Maps
NAU6104 Marker 81.5 Cotton - HDC - 17 NAU6104 Marker 111.8 (cM) Automated name-based View Maps
Cotton - TH - 17 NAU6104 Marker 4.7 (cM) Automated name-based View Maps
NAU2836 Marker 79.4 Cotton - TH - 17 NAU2836 Marker 2.3 (cM) Automated name-based View Maps
Cotton - HDC - 3 CLU4140 Marker 145.1 (cM) Automated name-based View Maps
Cotton - E3 - 3 NAU2836 Marker 14.5 (cM) Automated name-based View Maps
Cotton - HDC - 17 CLU4140 Marker 113.8 (cM) Automated name-based View Maps
NAU2161 Marker 80.6 Cotton - Guazuncho2xVH8-RIL - c3 NAU2161 Marker 73.31 (cM) Automated name-based View Maps
Cotton - HDC - 3 NAU2161 Marker 13.6 (cM) Automated name-based View Maps
Cotton - GVc - 3 NAU2161 Marker 110.4 (cM) Automated name-based View Maps
NAU3083 Marker 78 Cotton - E3 - 3 NAU3083 Marker 0 (cM) Automated name-based View Maps
Cotton - HDC - 3 CLU1778 Marker 159.4 (cM) Automated name-based View Maps
Y1026 Marker 73.1 No other positions
NAU3172 Marker 73.7 Cotton - HDC - 3 NAU3172 Marker 130.7 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr03 NAU3172 Marker Cotton 44,099,649 - 44,100,229 (bp) Automated name-based View Maps
Cotton - E3 - 3 NAU3172 Marker 29.5 (cM) Automated name-based View Maps
NAU0862 Marker 71.3 Cotton - HDC - 3 NAU0862 Marker 17.7 (cM) Automated name-based View Maps
Cotton - GVc - 3 NAU0862 Marker 106.9 (cM) Automated name-based View Maps
Cotton - T3 - 3 NAU0862 Marker 8.74 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c3 NAU0862b Marker 70.42 (cM) Automated name-based View Maps
NAU3016 Marker 67.2 Cotton - HDC - 17 NAU3016 Marker 98.9 (cM) Automated name-based View Maps
Cotton - TH - 17 NAU3016 Marker 22.9 (cM) Automated name-based View Maps
Cotton - E3 - 17 NAU3016 Marker 4.2 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr03 NAU3016 Marker Cotton 42,640,991 - 42,641,683 (bp) Automated name-based View Maps
JESPR107 Marker 68.5 Cotton - GVc - 3 JESPR107 Marker 106.9 (cM) Automated name-based View Maps
Cotton - E3 - 3 JESPR107 Marker 151.9 (cM) Automated name-based View Maps
Cotton - HDC - 3 JESPR107 Marker 16.4 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c3 JESPR107 Marker 70.4 (cM) Automated name-based View Maps
Cotton - CH - 3 JESPR107 Marker 113.7 (cM) Automated name-based View Maps
NAU5233 Marker 64 Cotton - E3 - 3 NAU5233 Marker 52.8 (cM) Automated name-based View Maps
Cotton - HDC - 3 NAU5233 Marker 112.7 (cM) Automated name-based View Maps
NAU3839 Marker 62.6 Cotton - HDC - 3 CLU1768 Marker 112.8 (cM) Automated name-based View Maps
Cotton - E3 - 3 NAU3839 Marker 52.7 (cM) Automated name-based View Maps
NAU1167 Marker 63.5 Cotton - HDC - 3 CLU1324 Marker 113 (cM) Automated name-based View Maps
Cotton - CH - 17 NAU1167 Marker 25 (cM) Automated name-based View Maps
Cotton - T3 - 3 NAU1167 Marker 97.45 (cM) Automated name-based View Maps
NAU5444 Marker 58.7 No other positions
NAU3479 Marker 56.8 Cotton - E3 - 3 NAU3479 Marker 55 (cM) Automated name-based View Maps
Cotton - HDC - 3 CLU923 Marker 111 (cM) Automated name-based View Maps