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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set Cotton-TH
(Reference Set)
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Correspondences
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Maps 5
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - TH [ View Map Set Info ]
Map Name: 5
Map Start: 0 cM
Map Stop: 209.9 cM
Features by Type:
119 Marker
119 Total

Map Features

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Items 1 to 25 of 119.       of 5 | Next
Cotton - TH - 5
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
NAU2001 Marker 143.6 Cotton - GVc - 5 NAU2001 Marker 93.2 (cM) Automated name-based View Maps
Cotton - HDC - 5 NAU2001 Marker 47.8 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c5 NAU2001 Marker 73.69 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 NAU2001 Marker Cotton 32,543,763 - 32,544,381 (bp) Automated name-based View Maps
Y1808 Marker 144.5 Cotton - HDC - 5 Y1808 Marker 49.6 (cM) Automated name-based View Maps
NAU2296 Marker 145 Cotton - HDC - 5 NAU2296 Marker 48.9 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 NAU2296 Marker Cotton 45,161,645 - 45,162,123 (bp) Automated name-based View Maps
Cotton - T3 - 5 NAU2296 Marker 126.36 (cM) Automated name-based View Maps
NAU4040 Marker 145.3 Cotton - Graimondii_physical - Gr_Chr09 NAU4040 Marker Cotton 40,608,094 - 40,608,942 (bp) Automated name-based View Maps
Cotton - HDC - 5 NAU4040 Marker 48.8 (cM) Automated name-based View Maps
NAU6105 Marker 145.8 Cotton - TH - 19 NAU6105 Marker 128.8 (cM) Automated name-based View Maps
Cotton - HDC - 5 NAU6105 Marker 48.5 (cM) Automated name-based View Maps
Cotton - HDC - 19 NAU6105 Marker 53.1 (cM) Automated name-based View Maps
NAU3569 Marker 146.2 Cotton - HDC - 5 NAU3569 Marker 48.3 (cM) Automated name-based View Maps
Cotton - E3 - 5 NAU3569 Marker 189.6 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 NAU3569 Marker Cotton 39,954,788 - 39,955,490 (bp) Automated name-based View Maps
NAU3138 Marker 146.4 Cotton - HDC - 19 NAU3138 Marker 111 (cM) Automated name-based View Maps
Cotton - HDC - 22 NAU3138 Marker 52.5 (cM) Automated name-based View Maps
Cotton - HDC - 5 NAU3138 Marker 48.2 (cM) Automated name-based View Maps
Cotton - TH - 19 NAU3138 Marker 77 (cM) Automated name-based View Maps
Cotton - E3 - 22 NAU3138 Marker 85.6 (cM) Automated name-based View Maps
CIR294 Marker 146.9 Cotton - Guazuncho2xVH8-RIL - c22 CIR294b Marker 53.68 (cM) Automated name-based View Maps
Cotton - HDC - 22 CIR294 Marker 45 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c22 CIR294 Marker 91.3 (cM) Automated name-based View Maps
Cotton - CH - 5 CIR294 Marker 75.8 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c5 CIR294a Marker 77.23 (cM) Automated name-based View Maps
Cotton - HDC - 5 CIR294 Marker 49.6 (cM) Automated name-based View Maps
Cotton - GVc - 5 CIR294 Marker 91.9 (cM) Automated name-based View Maps
Cotton - E3 - 5 CIR294 Marker 191.2 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c5 CIR294 Marker 254.4 (cM) Automated name-based View Maps
Cotton - GVc - 22 CIR294 Marker 61.3 (cM) Automated name-based View Maps
NAU1003 Marker 148.1 Cotton - Graimondii_physical - Gr_Chr02 NAU1003 Marker Cotton 43,897,041 - 43,897,491 (bp) Automated name-based View Maps
Cotton - HDC - 5 NAU1003 Marker 47.2 (cM) Automated name-based View Maps
Y1449 Marker 0 Cotton - HDC - 5 Y1449 Marker 117 (cM) Automated name-based View Maps
NAU3824 Marker 148.4 Cotton - HDC - 5 NAU3824 Marker 47.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr12 NAU3824 Marker Cotton 13,357,795 - 13,358,379 (bp) Automated name-based View Maps
Cotton - TH - 22 NAU3824 Marker 57.9 (cM) Automated name-based View Maps
Cotton - E3 - 22 NAU3824 Marker 93.7 (cM) Automated name-based View Maps
Cotton - HDC - 22 NAU3824 Marker 54.8 (cM) Automated name-based View Maps
Y1349-345 Marker 0.6 Cotton - HDC - 5 Y1349-345 Marker 116.7 (cM) Automated name-based View Maps
NAU6172 Marker 149.6 Cotton - HDC - 5 NAU6172 Marker 46.4 (cM) Automated name-based View Maps
NAU1137 Marker 0.6 Cotton - CH - 5 NAU1137 Marker 224.5 (cM) Automated name-based View Maps
Cotton - GVc - 5 NAU1137 Marker 22.5 (cM) Automated name-based View Maps
Cotton - HDC - 5 CLU2715 Marker 116.7 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c5 NAU1137 Marker 0.31 (cM) Automated name-based View Maps
Cotton - E3 - 5 NAU1137 Marker 29.1 (cM) Automated name-based View Maps
NAU2376 Marker 149.7 Cotton - T3 - 22 NAU2376 Marker 48.57 (cM) Automated name-based View Maps
Cotton - TH - 22 NAU2376 Marker 57.7 (cM) Automated name-based View Maps
Cotton - HDC - 22 NAU2376 Marker 41.7 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr12 NAU2376 Marker Cotton 14,842,402 - 14,842,953 (bp) Automated name-based View Maps
Cotton - HDC - 5 NAU2376 Marker 46.4 (cM) Automated name-based View Maps
NAU1605 Marker 1.8 Cotton - HDC - 19 NAU1605 Marker 180.5 (cM) Automated name-based View Maps
Cotton - TH - 19 NAU1605 Marker 6.5 (cM) Automated name-based View Maps
Cotton - HDC - 5 NAU1605 Marker 116.5 (cM) Automated name-based View Maps
NAU6494 Marker 149.9 Cotton - HDC - 5 NAU6494 Marker 46.3 (cM) Automated name-based View Maps
BNL3043 Marker 5.9 Cotton - E3 - 19 BNL3043 Marker 10.1 (cM) Automated name-based View Maps
Cotton - TH - 19 BNL3043 Marker 6.9 (cM) Automated name-based View Maps
Cotton - HDC - 5 BNL3043 Marker 116.1 (cM) Automated name-based View Maps
Cotton - HDC - 19 BNL3043 Marker 180 (cM) Automated name-based View Maps
Cotton - CH - 19 BNL3043 Marker 176.6 (cM) Automated name-based View Maps
em6GA45-80 Marker 150.3 Cotton - HDC - 5 em6GA45-80 Marker 46.1 (cM) Automated name-based View Maps
NAU3245 Marker 6.9 Cotton - HDC - 5 NAU3245 Marker 116 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 NAU3245 Marker Cotton 946,779 - 947,345 (bp) Automated name-based View Maps
NAU4898 Marker 150.6 Cotton - HDC - 5 CLU1691 Marker 42 (cM) Automated name-based View Maps
Cotton - E3 - 5 NAU4898 Marker 194.7 (cM) Automated name-based View Maps
NAU3607 Marker 12.1 Cotton - E3 - 5 NAU3607 Marker 33.9 (cM) Automated name-based View Maps
Cotton - HDC - 5 CLU4422 Marker 120.3 (cM) Automated name-based View Maps
Cotton - HDC - 5 CLU4422 Marker 115.3 (cM) Automated name-based View Maps
BNL3995 Marker 151.3 Cotton - Guazuncho2xVH8-BC1 - c5 BNL3995 Marker 258.5 (cM) Automated name-based View Maps
Cotton - GVc - 5 BNL3995 Marker 95.3 (cM) Automated name-based View Maps
Cotton - T3 - 5 BNL3995 Marker 130.17 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr12 BNL3995 Marker Cotton 15,134,435 - 15,134,833 (bp) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c5 BNL3995 Marker 78.74 (cM) Automated name-based View Maps
Cotton - CH - 5 BNL3995 Marker 74.2 (cM) Automated name-based View Maps
Cotton - HDC - 5 BNL3995 Marker 45.5 (cM) Automated name-based View Maps
NAU4034 Marker 13.5 Cotton - E3 - 5 NAU4034 Marker 23.8 (cM) Automated name-based View Maps
Cotton - HDC - 5 CLU4422 Marker 120.3 (cM) Automated name-based View Maps
Cotton - HDC - 5 CLU4422 Marker 115.3 (cM) Automated name-based View Maps
NAU1127 Marker 151.9 Cotton - HDC - 5 CLU1691 Marker 42 (cM) Automated name-based View Maps
Cotton - T3 - 5 NAU1127 Marker 133.35 (cM) Automated name-based View Maps