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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-TSH516
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG10
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - TSH516 [ View Map Set Info ]
Map Name: LG10
Map Start: 0 cM
Map Stop: 56.5 cM
Features by Type:
8 Marker
8 Total

Map Features

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Items 1 to 8 of 8.
Cocoa - TSH516 - LG10
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
mTcCIR104 Marker 39.8 Cocoa - Physical map - Tc10 mTcCIR104 Marker 2,683,374 - 2,683,755 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG10 mTcCIR104 Marker 25 (cM) Automated name-based View Maps
Cocoa - test - LG10 mTcCIR104 Marker 38.3 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG10 mTcCIR104 Marker 38.3 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG10 mTcCIR104 Marker 38.3 (cM) Automated name-based View Maps
mTcCIR155 Marker 40.5 Cocoa - consensus_disease_res - LG10 mTcCIR155 Marker 38.3 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG10 mTcCIR155 Marker 25 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG10 mTcCIR155 Marker 38.3 (cM) Automated name-based View Maps
Cocoa - test - LG10 mTcCIR155 Marker 38.3 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc10 mTcCIR155 Marker 2,777,323 - 2,777,810 (bp) Automated name-based View Maps
mTcCIR223 Marker 4.4 Cocoa - test - LG10 mTcCIR223 Marker 72.4 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc10 mTcCIR223 Marker 15,067,179 - 15,067,778 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG10 mTcCIR223 Marker 72.4 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG10 mTcCIR223 Marker 59.5 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG10 mTcCIR223 Marker 72.4 (cM) Automated name-based View Maps
mTcCIR229 Marker 56.5 Cocoa - test - LG10 mTcCIR229 Marker 11.9 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG10 mTcCIR229 Marker 11.9 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG10 mTcCIR229 Marker 11.9 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG10 mTcCIR229 Marker 3.2 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc10 mTcCIR229 Marker 730,966 - 731,386 (bp) Automated name-based View Maps
mTcCIR37 Marker 0 Cocoa - test - LG10 mTcCIR37 Marker 61.3 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG10 mTcCIR37 Marker 61.3 (cM) Automated name-based View Maps
RGH7 Marker 10.8 Cocoa - test - LG10 RGH7 Marker 66.3 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG10 RGH7 Marker 66.3 (cM) Automated name-based View Maps
RGH8 Marker 13.1 Cocoa - consensus_disease_res - LG10 RGH8 Marker 64.1 (cM) Automated name-based View Maps
Cocoa - test - LG10 RGH8 Marker 64.1 (cM) Automated name-based View Maps
mTcCIR61 Marker 22.6 Cocoa - test - LG10 mTcCIR61 Marker 51.4 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG10 mTcCIR61 Marker 51.4 (cM) Automated name-based View Maps