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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set Cocoa-TSH516
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Maps LG2
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Feature Types:
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Correspondence		 Always Display
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Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Image Type: PNG JPEG GIF SVG *
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Size of Dot Plot Pixels: 1
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Same Scale:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - TSH516 [ View Map Set Info ]
Map Name: LG2
Map Start: 0 cM
Map Stop: 99.6 cM
Features by Type:
23 Marker
23 Total

Map Features

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Items 1 to 23 of 23.
Cocoa - TSH516 - LG2
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
mTcCIR269 Marker 99.6 Cocoa - consensus_disease_res - LG2 mTcCIR269 Marker 75.7 (cM) Automated name-based View Maps
Cocoa - test - LG2 mTcCIR269 Marker 75.7 (cM) Automated name-based View Maps
mTcCIR261 Marker 92.6 Cocoa - test - LG2 mTcCIR261 Marker 79.8 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR261 Marker 79.8 (cM) Automated name-based View Maps
W123 Marker 86.7 Cocoa - consensus_disease_res - LG2 W123 Marker 89 (cM) Automated name-based View Maps
Cocoa - test - LG2 W123 Marker 89 (cM) Automated name-based View Maps
SHRSTc2 Marker 50.5 No other positions
mTcCIR139 Marker 49.3 Cocoa - consensus_disease_res - LG2 mTcCIR139 Marker 54.2 (cM) Automated name-based View Maps
Cocoa - test - LG2 mTcCIR139 Marker 54.2 (cM) Automated name-based View Maps
SHRSTc13 Marker 38 No other positions
mTcCIR152 Marker 36.8 Cocoa - test - LG2 mTcCIR152 Marker 38.8 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR152 Marker 38.8 (cM) Automated name-based View Maps
SHRSTc6 Marker 23.9 No other positions
SHRSTc21 Marker 23.9 No other positions
mTcCIR60 Marker 47.7 Cocoa - ref_UPA402xUF676 - LG2 mTcCIR60 Marker 51.5 (cM) Automated name-based View Maps
Cocoa - test - LG2 mTcCIR60 Marker 51.5 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR60 Marker 51.5 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc02 mTcCIR60 Marker 10,932,181 - 10,932,779 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR60 Marker 54.6 (cM) Automated name-based View Maps
mTcCIR48 Marker 69.7 Cocoa - ref_UPA402xUF676 - LG2 mTcCIR48 Marker 67.1 (cM) Automated name-based View Maps
Cocoa - test - LG2 mTcCIR48 Marker 67.1 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR48 Marker 70.7 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR48 Marker 67.1 (cM) Automated name-based View Maps
mTcCIR19 Marker 5.1 Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR19 Marker 14.6 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR19 Marker 8.7 (cM) Automated name-based View Maps
Cocoa - test - LG2 mTcCIR19 Marker 8.7 (cM) Automated name-based View Maps
Cocoa - DR1xCatongo - LG2 mTcCIR19 Marker 3.1 (cM) Automated name-based View Maps
Cocoa - IMC78xCatongo - LG2 mTcCIR19 Marker 0 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR19 Marker 8.7 (cM) Automated name-based View Maps
mTcCIR3 Marker 16.4 Cocoa - (Sca6xH)xC1 - LG2 mTcCIR3 Marker 17.6 (cM) Automated name-based View Maps
Cocoa - DR1xCatongo - LG2 mTcCIR3 Marker 15.1 (cM) Automated name-based View Maps
Cocoa - S52xCatongo - LG2 mTcCIR3 Marker 0 (cM) Automated name-based View Maps
Cocoa - test - LG2 mTcCIR3 Marker 17.5 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR3 Marker 17.5 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR3 Marker 25 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR3 Marker 17.5 (cM) Automated name-based View Maps
mTcCIR268 Marker 36.8 Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR268 Marker 45.3 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc02 mTcCIR268 Marker 7,606,811 - 7,607,390 (bp) Automated name-based View Maps
Cocoa - test - LG2 mTcCIR268 Marker 38.8 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR268 Marker 38.8 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR268 Marker 38.8 (cM) Automated name-based View Maps
mTcCIR252 Marker 0 Cocoa - Physical map - Tc02 mTcCIR252 Marker 712,221 - 712,428 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR252 Marker 2.5 (cM) Automated name-based View Maps
Cocoa - test - LG2 mTcCIR252 Marker 2.5 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR252 Marker 2.5 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR252 Marker 8 (cM) Automated name-based View Maps
mTcCIR240 Marker 9.2 Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR240 Marker 17.7 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR240 Marker 11.5 (cM) Automated name-based View Maps
Cocoa - test - LG2 mTcCIR240 Marker 11.5 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR240 Marker 11.5 (cM) Automated name-based View Maps
mTcCIR230 Marker 84.1 Cocoa - ref_UPA402xUF676 - LG2 mTcCIR230 Marker 84.3 (cM) Automated name-based View Maps
Cocoa - test - LG2 mTcCIR230 Marker 84.3 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR230 Marker 84.3 (cM) Automated name-based View Maps
mTcCIR228 Marker 84.8 Cocoa - consensus_disease_res - LG2 mTcCIR228 Marker 87.2 (cM) Automated name-based View Maps
Cocoa - test - LG2 mTcCIR228 Marker 87.2 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc02 mTcCIR228 Marker 26,252,963 - 26,253,241 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR228 Marker 90.9 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR228 Marker 87.2 (cM) Automated name-based View Maps
mTcCIR165 Marker 49.3 Cocoa - test - LG2 mTcCIR165 Marker 54.2 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR165 Marker 58 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR165 Marker 54.2 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc02 mTcCIR165 Marker 14,820,025 - 14,820,530 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR165 Marker 54.2 (cM) Automated name-based View Maps
mTcCIR162 Marker 56.9 Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR162 Marker 65.1 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc02 mTcCIR162 Marker 19,241,845 - 19,242,455 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR162 Marker 60.8 (cM) Automated name-based View Maps
Cocoa - test - LG2 mTcCIR162 Marker 60.8 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR162 Marker 60.8 (cM) Automated name-based View Maps
mTcCIR129 Marker 23.5 Cocoa - consensus_disease_res - LG2 mTcCIR129 Marker 19.7 (cM) Automated name-based View Maps
Cocoa - test - LG2 mTcCIR129 Marker 19.7 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR129 Marker 19.7 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR129 Marker 27 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc02 mTcCIR129 Marker 4,568,896 - 4,569,242 (bp) Automated name-based View Maps
mTcCIR73 Marker 99.6 Cocoa - test - LG2 mTcCIR73 Marker 94.9 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR73 Marker 94.9 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR73 Marker 94.9 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR73 Marker 96.1 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc02 mTcCIR73 Marker 27,352,085 - 27,352,439 (bp) Automated name-based View Maps
mTcCIR68 Marker 92.6 Cocoa - test - LG2 mTcCIR68 Marker 92.8 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR68 Marker 92.8 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc02 mTcCIR68 Marker 26,854,246 - 26,854,833 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR68 Marker 92.8 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR68 Marker 94.1 (cM) Automated name-based View Maps