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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Cocoa-TSH516
(Reference Set)
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Correspondences
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Maps LG4
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 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - TSH516 [ View Map Set Info ]
Map Name: LG4
Map Start: 0 cM
Map Stop: 47.7 cM
Features by Type:
14 Marker
14 Total

Map Features

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Items 1 to 14 of 14.
Cocoa - TSH516 - LG4
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
mTcCIR206 Marker 47.7 Cocoa - test - LG4 mTcCIR206 Marker 24.1 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR206 Marker 24.1 (cM) Automated name-based View Maps
SHRSTc33 Marker 22.3 No other positions
mTcCIR43 Marker 30.8 Cocoa - consensus_disease_res - LG4 mTcCIR43 Marker 39.4 (cM) Automated name-based View Maps
Cocoa - test - LG4 mTcCIR43 Marker 39.4 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG4 mTcCIR43 Marker 39.4 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG4 mTcCIR43 Marker 33.4 (cM) Automated name-based View Maps
mTcCIR33 Marker 13.4 Cocoa - Physical map - Tc04 mTcCIR33 Marker 20,031,179 - 20,031,975 (bp) Automated name-based View Maps
Cocoa - test - LG4 mTcCIR33 Marker 51.2 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG4 mTcCIR33 Marker 51.2 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR33 Marker 51.2 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG4 mTcCIR33 Marker 45.1 (cM) Automated name-based View Maps
mTcCIR32 Marker 25.5 Cocoa - test - LG4 mTcCIR32 Marker 44.6 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR32 Marker 44.6 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG4 mTcCIR32 Marker 44.6 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG4 mTcCIR32 Marker 40.9 (cM) Automated name-based View Maps
mTcCIR12 Marker 33.1 Cocoa - consensus_disease_res - LG4 mTcCIR12 Marker 35.9 (cM) Automated name-based View Maps
Cocoa - IMC78xCatongo - LG4 mTcCIR12 Marker 37 (cM) Automated name-based View Maps
Cocoa - (Sca6xH)xC1 - LG4 mTcCIR12 Marker 27.5 (cM) Automated name-based View Maps
Cocoa - test - LG4 mTcCIR12 Marker 35.9 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG4 mTcCIR12 Marker 35.9 (cM) Automated name-based View Maps
Cocoa - DR1xCatongo - LG4 mTcCIR12 Marker 41.1 (cM) Automated name-based View Maps
mTcCIR242 Marker 0 Cocoa - test - LG4 mTcCIR242 Marker 69.5 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG4 mTcCIR242 Marker 61.6 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG4 mTcCIR242 Marker 69.5 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR242 Marker 69.5 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc04 mTcCIR242 Marker 22,829,060 - 22,829,425 (bp) Automated name-based View Maps
mTcCIR241 Marker 3.8 Cocoa - SSR_SNP_consensus_map - LG4 mTcCIR241 Marker 55.1 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR241 Marker 61.1 (cM) Automated name-based View Maps
Cocoa - test - LG4 mTcCIR241 Marker 61.1 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG4 mTcCIR241 Marker 61.1 (cM) Automated name-based View Maps
mTcCIR237 Marker 13.8 Cocoa - ref_UPA402xUF676 - LG4 mTcCIR237 Marker 52.7 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR237 Marker 52.7 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc04 mTcCIR237 Marker 20,145,024 - 20,145,232 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG4 mTcCIR237 Marker 47.4 (cM) Automated name-based View Maps
Cocoa - test - LG4 mTcCIR237 Marker 52.7 (cM) Automated name-based View Maps
mTcCIR234 Marker 1.5 Cocoa - consensus_disease_res - LG4 mTcCIR234 Marker 69.5 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc04 mTcCIR234 Marker 22,562,188 - 22,562,658 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG4 mTcCIR234 Marker 62 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG4 mTcCIR234 Marker 69.5 (cM) Automated name-based View Maps
Cocoa - test - LG4 mTcCIR234 Marker 69.5 (cM) Automated name-based View Maps
mTcCIR233 Marker 5.2 Cocoa - SSR_SNP_consensus_map - LG4 mTcCIR233 Marker 55.2 (cM) Automated name-based View Maps
Cocoa - test - LG4 mTcCIR233 Marker 61.6 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR233 Marker 61.6 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG4 mTcCIR233 Marker 61.6 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc04 mTcCIR233 Marker 21,565,645 - 21,566,242 (bp) Automated name-based View Maps
mTcCIR213 Marker 47.7 Cocoa - ref_UPA402xUF676 - LG4 mTcCIR213 Marker 24.1 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG4 mTcCIR213 Marker 22.3 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc04 mTcCIR213 Marker 11,679,297 - 11,680,231 (bp) Automated name-based View Maps
Cocoa - test - LG4 mTcCIR213 Marker 24.1 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR213 Marker 24.1 (cM) Automated name-based View Maps
mTcCIR117 Marker 9.9 Cocoa - ref_UPA402xUF676 - LG4 mTcCIR117 Marker 57.7 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG4 mTcCIR117 Marker 51.6 (cM) Automated name-based View Maps
Cocoa - test - LG4 mTcCIR117 Marker 57.7 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR117 Marker 57.7 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc04 mTcCIR117 Marker 20,971,038 - 20,971,337 (bp) Automated name-based View Maps
mTcCIR95 Marker 19.5 Cocoa - test - LG4 mTcCIR95 Marker 48 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG4 mTcCIR95 Marker 43.2 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG4 mTcCIR95 Marker 48 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR95 Marker 48 (cM) Automated name-based View Maps