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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-TSH516
(Reference Set)
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Correspondences
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Maps LG6
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - TSH516 [ View Map Set Info ]
Map Name: LG6
Map Start: 0 cM
Map Stop: 60.9 cM
Features by Type:
11 Marker
11 Total

Map Features

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Items 1 to 11 of 11.
Cocoa - TSH516 - LG6
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
mTcCIR71 Marker 32.8 Cocoa - ref_UPA402xUF676 - LG6 mTcCIR71 Marker 30.1 (cM) Automated name-based View Maps
Cocoa - test - LG6 mTcCIR71 Marker 30.1 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG6 mTcCIR71 Marker 33.6 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG6 mTcCIR71 Marker 30.1 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc06 mTcCIR71 Marker 10,478,067 - 10,478,443 (bp) Automated name-based View Maps
mTcCIR136 Marker 1.5 Cocoa - ref_UPA402xUF676 - LG6 mTcCIR136 Marker 2.7 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc06 mTcCIR136 Marker 581,553 - 582,101 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG6 mTcCIR136 Marker 2.7 (cM) Automated name-based View Maps
Cocoa - test - LG6 mTcCIR136 Marker 2.7 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG6 mTcCIR136 Marker 7 (cM) Automated name-based View Maps
mTcCIR209 Marker 55 Cocoa - Physical map - Tc06 mTcCIR209 Marker 14,485,223 - 14,485,553 (bp) Automated name-based View Maps
Cocoa - test - LG6 mTcCIR209 Marker 53.9 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG6 mTcCIR209 Marker 53.9 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG6 mTcCIR209 Marker 55.3 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 mTcCIR209 Marker 53.9 (cM) Automated name-based View Maps
mTcCIR276 Marker 34.9 Cocoa - ref_UPA402xUF676 - LG6 mTcCIR276 Marker 27.5 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG6 mTcCIR276 Marker 27.5 (cM) Automated name-based View Maps
Cocoa - test - LG6 mTcCIR276 Marker 27.5 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc06 mTcCIR276 Marker 10,258,427 - 10,258,641 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG6 mTcCIR276 Marker 31.6 (cM) Automated name-based View Maps
mTcCIR291 Marker 60.9 Cocoa - Physical map - Tc06 mTcCIR291 Marker 15,327,995 - 15,328,478 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG6 mTcCIR291 Marker 64 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 mTcCIR291 Marker 62.8 (cM) Automated name-based View Maps
Cocoa - test - LG6 mTcCIR291 Marker 62.8 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG6 mTcCIR291 Marker 62.8 (cM) Automated name-based View Maps
mTcCIR6 Marker 0 Cocoa - IMC78xCatongo - LG6 mTcCIR6 Marker 74.1 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 mTcCIR6 Marker 0 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG6 mTcCIR6 Marker 0 (cM) Automated name-based View Maps
Cocoa - DR1xCatongo - LG6 mTcCIR6 Marker 0 (cM) Automated name-based View Maps
Cocoa - S52xCatongo - LG6 mTcCIR6 Marker 0 (cM) Automated name-based View Maps
Cocoa - test - LG6 mTcCIR6 Marker 0 (cM) Automated name-based View Maps
mTcCIR9 Marker 58.5 Cocoa - Physical map - Tc06 mTcCIR9 Marker 15,005,639 - 15,005,955 (bp) Automated name-based View Maps
Cocoa - test - LG6 mTcCIR9 Marker 59.1 (cM) Automated name-based View Maps
Cocoa - (Sca6xH)xC1 - LG6 mTcCIR9 Marker 67.8 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG6 mTcCIR9 Marker 59.1 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG6 mTcCIR9 Marker 60.2 (cM) Automated name-based View Maps
Cocoa - IMC78xCatongo - LG6 mTcCIR9 Marker 128.7 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 mTcCIR9 Marker 59.1 (cM) Automated name-based View Maps
mTcCIR25 Marker 38 Cocoa - test - LG6 mTcCIR25 Marker 34.4 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 mTcCIR25 Marker 34.4 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG6 mTcCIR25 Marker 34.4 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG6 mTcCIR25 Marker 37.5 (cM) Automated name-based View Maps
mTcCIR53 Marker 10.5 Cocoa - test - LG6 mTcCIR53 Marker 12.8 (cM) Automated name-based View Maps
Cocoa - (Sca6xH)xC1 - LG6 mTcCIR53 Marker 12.3 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG6 mTcCIR53 Marker 12.8 (cM) Automated name-based View Maps
RGH3a Marker 5.4 Cocoa - test - LG6 RGH3a Marker 6.1 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG6 RGH3a Marker 6.1 (cM) Automated name-based View Maps
SHRSTc44 Marker 35.3 No other positions