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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Cocoa-TSH516
(Reference Set)
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Correspondences
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Maps LG7
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 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - TSH516 [ View Map Set Info ]
Map Name: LG7
Map Start: 0 cM
Map Stop: 42.4 cM
Features by Type:
16 Marker
16 Total

Map Features

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Items 1 to 16 of 16.
Cocoa - TSH516 - LG7
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
mTcCIR116 Marker 40.9 Cocoa - test - LG7 mTcCIR116 Marker 47.5 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG7 mTcCIR116 Marker 47.5 (cM) Automated name-based View Maps
RGH4 Marker 21.3 Cocoa - consensus_disease_res - LG7 RGH4 Marker 20.51 (cM) Automated name-based View Maps
Cocoa - test - LG7 RGH4 Marker 20.51 (cM) Automated name-based View Maps
RGH5 Marker 18 Cocoa - consensus_disease_res - LG7 RGH5 Marker 17.84 (cM) Automated name-based View Maps
Cocoa - test - LG7 RGH5 Marker 17.84 (cM) Automated name-based View Maps
RGH1 Marker 6.8 Cocoa - consensus_disease_res - LG7 RGH1 Marker 8.9 (cM) Automated name-based View Maps
Cocoa - test - LG7 RGH1 Marker 8.9 (cM) Automated name-based View Maps
mTcCIR56 Marker 32.2 Cocoa - test - LG7 mTcCIR56 Marker 33 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG7 mTcCIR56 Marker 33 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG7 mTcCIR56 Marker 33 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG7 mTcCIR56 Marker 34.1 (cM) Automated name-based View Maps
mTcCIR55 Marker 34.4 Cocoa - ref_UPA402xUF676 - LG7 mTcCIR55 Marker 35.5 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc07 mTcCIR55 Marker 6,803,910 - 6,804,968 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG7 mTcCIR55 Marker 35.5 (cM) Automated name-based View Maps
Cocoa - test - LG7 mTcCIR55 Marker 35.5 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG7 mTcCIR55 Marker 36.8 (cM) Automated name-based View Maps
mTcCIR46 Marker 28 Cocoa - consensus_disease_res - LG7 mTcCIR46 Marker 25.4 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG7 mTcCIR46 Marker 26.8 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc07 mTcCIR46 Marker 5,794,657 - 5,795,333 (bp) Automated name-based View Maps
Cocoa - test - LG7 mTcCIR46 Marker 25.4 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG7 mTcCIR46 Marker 25.4 (cM) Automated name-based View Maps
mTcCIR13 Marker 11 No other positions
mTcCIR277 Marker 40.9 Cocoa - test - LG7 mTcCIR277 Marker 47.5 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG7 mTcCIR277 Marker 47.5 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG7 mTcCIR277 Marker 47.5 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc07 mTcCIR277 Marker 11,348,363 - 11,348,933 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG7 mTcCIR277 Marker 48.9 (cM) Automated name-based View Maps
mTcCIR190 Marker 0.4 Cocoa - consensus_disease_res - LG7 mTcCIR190 Marker 3.8 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG7 mTcCIR190 Marker 3.8 (cM) Automated name-based View Maps
Cocoa - test - LG7 mTcCIR190 Marker 3.8 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG7 mTcCIR190 Marker 8.2 (cM) Automated name-based View Maps
mTcCIR186 Marker 42.4 Cocoa - test - LG7 mTcCIR186 Marker 49.6 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG7 mTcCIR186 Marker 49.6 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG7 mTcCIR186 Marker 49.6 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG7 mTcCIR186 Marker 50.6 (cM) Automated name-based View Maps
mTcCIR181 Marker 28 Cocoa - consensus_disease_res - LG7 mTcCIR181 Marker 25.8 (cM) Automated name-based View Maps
Cocoa - test - LG7 mTcCIR181 Marker 25.8 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG7 mTcCIR181 Marker 27.3 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG7 mTcCIR181 Marker 25.8 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc07 mTcCIR181 Marker 5,794,645 - 5,795,342 (bp) Automated name-based View Maps
mTcCIR179 Marker 39.8 Cocoa - test - LG7 mTcCIR179 Marker 44.6 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG7 mTcCIR179 Marker 44.6 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG7 mTcCIR179 Marker 44.6 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc07 mTcCIR179 Marker 9,704,012 - 9,704,461 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG7 mTcCIR179 Marker 44.9 (cM) Automated name-based View Maps
mTcCIR177 Marker 38.5 Cocoa - SSR_SNP_consensus_map - LG7 mTcCIR177 Marker 45.4 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG7 mTcCIR177 Marker 44.3 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG7 mTcCIR177 Marker 44.3 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc07 mTcCIR177 Marker 10,094,145 - 10,094,369 (bp) Automated name-based View Maps
Cocoa - test - LG7 mTcCIR177 Marker 44.3 (cM) Automated name-based View Maps
mTcCIR147 Marker 36.5 Cocoa - ref_UPA402xUF676 - LG7 mTcCIR147 Marker 40.6 (cM) Automated name-based View Maps
Cocoa - test - LG7 mTcCIR147 Marker 40.6 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG7 mTcCIR147 Marker 41.3 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG7 mTcCIR147 Marker 40.6 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc07 mTcCIR147 Marker 7,860,575 - 7,860,984 (bp) Automated name-based View Maps
mTcCIR141 Marker 0 Cocoa - Physical map - Tc07 mTcCIR141 Marker 437,226 - 437,547 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG7 mTcCIR141 Marker 8.1 (cM) Automated name-based View Maps
Cocoa - test - LG7 mTcCIR141 Marker 3.4 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG7 mTcCIR141 Marker 3.4 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG7 mTcCIR141 Marker 3.4 (cM) Automated name-based View Maps