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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-TSH516
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG8
Start
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - TSH516 [ View Map Set Info ]
Map Name: LG8
Map Start: 0 cM
Map Stop: 50.9 cM
Features by Type:
10 Marker
10 Total

Map Features

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Items 1 to 10 of 10.
Cocoa - TSH516 - LG8
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
SHRSTc20 Marker 32.6 No other positions
mTcCIR26 Marker 16.2 Cocoa - ref_UPA402xUF676 - LG8 mTcCIR26 Marker 35.6 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG8 mTcCIR26 Marker 35.3 (cM) Automated name-based View Maps
Cocoa - test - LG8 mTcCIR26 Marker 35.6 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG8 mTcCIR26 Marker 35.6 (cM) Automated name-based View Maps
Cocoa - (Sca6xH)xC1 - LG8 mTcCIR26 Marker 16.9 (cM) Automated name-based View Maps
mTcCIR1 Marker 50.9 Cocoa - DR1xCatongo - LG8 mTcCIR1 Marker 0 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG8 mTcCIR1 Marker 0 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG8 mTcCIR1 Marker 0 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc08 mTcCIR1 Marker 195,613 - 195,946 (bp) Automated name-based View Maps
Cocoa - test - LG8 mTcCIR1 Marker 0 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 mTcCIR1 Marker 0 (cM) Automated name-based View Maps
mTcCIR282 Marker 44.9 Cocoa - consensus_disease_res - LG8 mTcCIR282 Marker 10 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc08 mTcCIR282 Marker 954,209 - 954,809 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 mTcCIR282 Marker 10 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG8 mTcCIR282 Marker 9.5 (cM) Automated name-based View Maps
Cocoa - test - LG8 mTcCIR282 Marker 10 (cM) Automated name-based View Maps
mTcCIR225 Marker 34.5 Cocoa - ref_UPA402xUF676 - LG8 mTcCIR225 Marker 21.1 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG8 mTcCIR225 Marker 21.1 (cM) Automated name-based View Maps
Cocoa - test - LG8 mTcCIR225 Marker 21.1 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG8 mTcCIR225 Marker 21.6 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc08 mTcCIR225 Marker 2,343,118 - 2,343,797 (bp) Automated name-based View Maps
mTcCIR211 Marker 32.6 Cocoa - Physical map - Tc08 mTcCIR211 Marker 2,618,157 - 2,618,571 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG8 mTcCIR211 Marker 22.7 (cM) Automated name-based View Maps
Cocoa - test - LG8 mTcCIR211 Marker 22.7 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG8 mTcCIR211 Marker 23.6 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 mTcCIR211 Marker 22.7 (cM) Automated name-based View Maps
mTcCIR200 Marker 22.4 Cocoa - consensus_disease_res - LG8 mTcCIR200 Marker 30 (cM) Automated name-based View Maps
Cocoa - test - LG8 mTcCIR200 Marker 30 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 mTcCIR200 Marker 30 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG8 mTcCIR200 Marker 29.7 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc08 mTcCIR200 Marker 4,510,432 - 4,510,748 (bp) Automated name-based View Maps
mTcCIR189 Marker 5.8 Cocoa - consensus_disease_res - LG8 mTcCIR189 Marker 46.9 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG8 mTcCIR189 Marker 46.1 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 mTcCIR189 Marker 46.9 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc08 mTcCIR189 Marker 8,948,439 - 8,948,907 (bp) Automated name-based View Maps
Cocoa - test - LG8 mTcCIR189 Marker 46.9 (cM) Automated name-based View Maps
mTcCIR134 Marker 3 Cocoa - Physical map - Tc08 mTcCIR134 Marker 9,269,521 - 9,269,779 (bp) Automated name-based View Maps
Cocoa - test - LG8 mTcCIR134 Marker 50.1 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 mTcCIR134 Marker 50.1 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG8 mTcCIR134 Marker 48.5 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG8 mTcCIR134 Marker 50.1 (cM) Automated name-based View Maps
mTcCIR103 Marker 0 Cocoa - test - LG8 mTcCIR103 Marker 56.7 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 mTcCIR103 Marker 56.7 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG8 mTcCIR103 Marker 56.7 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc08 mTcCIR103 Marker 10,444,303 - 10,444,885 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG8 mTcCIR103 Marker 54.7 (cM) Automated name-based View Maps