CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-TSH516
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG9
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - TSH516 [ View Map Set Info ]
Map Name: LG9
Map Start: 0 cM
Map Stop: 95 cM
Features by Type:
24 Marker
3 QTL
27 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 27.       of 2 | Next
Cocoa - TSH516 - LG9
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
mTcCIR64 Marker 24 Cocoa - Physical map - Tc09 mTcCIR64 Marker 24,083,880 - 24,084,545 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG9 mTcCIR64 Marker 70.2 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG9 mTcCIR64 Marker 71.5 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG9 mTcCIR64 Marker 71.5 (cM) Automated name-based View Maps
Cocoa - test - LG9 mTcCIR64 Marker 71.5 (cM) Automated name-based View Maps
mTcCIR79 Marker 0 Cocoa - test - LG9 mTcCIR79 Marker 94.1 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG9 mTcCIR79 Marker 94.1 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG9 mTcCIR79 Marker 93.2 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG9 mTcCIR79 Marker 94.1 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc09 mTcCIR79 Marker 27,851,226 - 27,851,644 (bp) Automated name-based View Maps
mTcCIR85 Marker 3.4 Cocoa - ref_UPA402xUF676 - LG9 mTcCIR85 Marker 89.8 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG9 mTcCIR85 Marker 89.8 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG9 mTcCIR85 Marker 88.4 (cM) Automated name-based View Maps
Cocoa - test - LG9 mTcCIR85 Marker 89.8 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc09 mTcCIR85 Marker 27,557,360 - 27,557,729 (bp) Automated name-based View Maps
mTcCIR98 Marker 24 Cocoa - ref_UPA402xUF676 - LG9 mTcCIR98 Marker 72.6 (cM) Automated name-based View Maps
Cocoa - test - LG9 mTcCIR98 Marker 72.6 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG9 mTcCIR98 Marker 72.6 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc09 mTcCIR98 Marker 24,559,441 - 24,560,008 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG9 mTcCIR98 Marker 70.5 (cM) Automated name-based View Maps
mTcCIR126 Marker 85.2 Cocoa - consensus_disease_res - LG9 mTcCIR126 Marker 12.6 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG9 mTcCIR126 Marker 9.7 (cM) Automated name-based View Maps
Cocoa - test - LG9 mTcCIR126 Marker 12.6 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc09 mTcCIR126 Marker 1,731,846 - 1,732,344 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG9 mTcCIR126 Marker 12.6 (cM) Automated name-based View Maps
mTcCIR157 Marker 58.2 Cocoa - Physical map - Tc09 mTcCIR157 Marker 9,272,888 - 9,273,371 (bp) Automated name-based View Maps
Cocoa - test - LG9 mTcCIR157 Marker 40.1 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG9 mTcCIR157 Marker 40.1 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG9 mTcCIR157 Marker 40.1 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG9 mTcCIR157 Marker 38.7 (cM) Automated name-based View Maps
mTcCIR160 Marker 55.6 Cocoa - ref_UPA402xUF676 - LG9 mTcCIR160 Marker 43.5 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG9 mTcCIR160 Marker 41.6 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc09 mTcCIR160 Marker 10,596,965 - 10,597,342 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG9 mTcCIR160 Marker 43.5 (cM) Automated name-based View Maps
Cocoa - test - LG9 mTcCIR160 Marker 43.5 (cM) Automated name-based View Maps
mTcCIR166 Marker 78.6 Cocoa - SSR_SNP_consensus_map - LG9 mTcCIR166 Marker 18.6 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc09 mTcCIR166 Marker 3,407,637 - 3,408,010 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG9 mTcCIR166 Marker 20 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG9 mTcCIR166 Marker 20 (cM) Automated name-based View Maps
Cocoa - test - LG9 mTcCIR166 Marker 20 (cM) Automated name-based View Maps
mTcCIR178 Marker 47.9 Cocoa - ref_UPA402xUF676 - LG9 mTcCIR178 Marker 50 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG9 mTcCIR178 Marker 48 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG9 mTcCIR178 Marker 50 (cM) Automated name-based View Maps
Cocoa - test - LG9 mTcCIR178 Marker 50 (cM) Automated name-based View Maps
mTcCIR212 Marker 32.7 Cocoa - SSR_SNP_consensus_map - LG9 mTcCIR212 Marker 61.3 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG9 mTcCIR212 Marker 61 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG9 mTcCIR212 Marker 61 (cM) Automated name-based View Maps
Cocoa - test - LG9 mTcCIR212 Marker 61 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc09 mTcCIR212 Marker 21,920,113 - 21,920,674 (bp) Automated name-based View Maps
mTcCIR243 Marker 95 Cocoa - ref_UPA402xUF676 - LG9 mTcCIR243 Marker 0 (cM) Automated name-based View Maps
Cocoa - test - LG9 mTcCIR243 Marker 0 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG9 mTcCIR243 Marker 0 (cM) Automated name-based View Maps
mTcCIR250 Marker 82.4 Cocoa - ref_UPA402xUF676 - LG9 mTcCIR250 Marker 15.1 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc09 mTcCIR250 Marker 2,402,639 - 2,403,032 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG9 mTcCIR250 Marker 15.1 (cM) Automated name-based View Maps
Cocoa - test - LG9 mTcCIR250 Marker 15.1 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG9 mTcCIR250 Marker 12.3 (cM) Automated name-based View Maps
mTcCIR251 Marker 72.4 Cocoa - consensus_disease_res - LG9 mTcCIR251 Marker 25.4 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG9 mTcCIR251 Marker 25.4 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG9 mTcCIR251 Marker 23.8 (cM) Automated name-based View Maps
Cocoa - test - LG9 mTcCIR251 Marker 25.4 (cM) Automated name-based View Maps
mTcCIR266 Marker 87.7 Cocoa - Physical map - Tc09 mTcCIR266 Marker 1,251,594 - 1,252,030 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG9 mTcCIR266 Marker 10.5 (cM) Automated name-based View Maps
Cocoa - test - LG9 mTcCIR266 Marker 10.5 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG9 mTcCIR266 Marker 6.6 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG9 mTcCIR266 Marker 10.5 (cM) Automated name-based View Maps
mTcCIR283 Marker 24.7 Cocoa - Physical map - Tc09 mTcCIR283 Marker 24,436,707 - 24,437,146 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG9 mTcCIR283 Marker 68.4 (cM) Automated name-based View Maps
Cocoa - test - LG9 mTcCIR283 Marker 68.4 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG9 mTcCIR283 Marker 68.4 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG9 mTcCIR283 Marker 68.4 (cM) Automated name-based View Maps
mTcCIR287 Marker 94.2 Cocoa - Physical map - Tc09 mTcCIR287 Marker 369,414 - 369,943 (bp) Automated name-based View Maps
Cocoa - test - LG9 mTcCIR287 Marker 2.6 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG9 mTcCIR287 Marker 2.6 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG9 mTcCIR287 Marker 2.6 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG9 mTcCIR287 Marker 0 (cM) Automated name-based View Maps
mTcCIR8 Marker 45.4 Cocoa - ref_UPA402xUF676 - LG9 mTcCIR8 Marker 52.5 (cM) Automated name-based View Maps
Cocoa - (Sca6xH)xC1 - LG9 mTcCIR8 Marker 60.1 (cM) Automated name-based View Maps
Cocoa - DR1xCatongo - LG9 mTcCIR8 Marker 62 (cM) Automated name-based View Maps
Cocoa - test - LG9 mTcCIR8 Marker 52.5 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG9 mTcCIR8 Marker 52.5 (cM) Automated name-based View Maps
mTcCIR24 Marker 67.8 Cocoa - test - LG9 mTcCIR24 Marker 31.8 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc09 mTcCIR24 Marker 6,347,478 - 6,348,241 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG9 mTcCIR24 Marker 30.5 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG9 mTcCIR24 Marker 31.8 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG9 mTcCIR24 Marker 31.8 (cM) Automated name-based View Maps
mTcCIR30 Marker 73.2 Cocoa - ref_UPA402xUF676 - LG9 mTcCIR30 Marker 23.5 (cM) Automated name-based View Maps
Cocoa - test - LG9 mTcCIR30 Marker 23.5 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG9 mTcCIR30 Marker 22.1 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG9 mTcCIR30 Marker 23.5 (cM) Automated name-based View Maps
mTcCIR35 Marker 60.8 Cocoa - Physical map - Tc09 mTcCIR35 Marker 7,810,749 - 7,811,101 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG9 mTcCIR35 Marker 38.3 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG9 mTcCIR35 Marker 36.9 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG9 mTcCIR35 Marker 38.3 (cM) Automated name-based View Maps
Cocoa - test - LG9 mTcCIR35 Marker 38.3 (cM) Automated name-based View Maps
mTcCIR58 Marker 36.3 Cocoa - SSR_SNP_consensus_map - LG9 mTcCIR58 Marker 59.4 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc09 mTcCIR58 Marker 21,588,642 - 21,589,168 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG9 mTcCIR58 Marker 60.1 (cM) Automated name-based View Maps
Cocoa - test - LG9 mTcCIR58 Marker 60.1 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG9 mTcCIR58 Marker 60.1 (cM) Automated name-based View Maps
RGH2 Marker 36.3 Cocoa - test - LG9 RGH2 Marker 60.1 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG9 RGH2 Marker 60.1 (cM) Automated name-based View Maps
mTcCIR108 Marker 87.3 No other positions
mTcCIR72 Marker 94.2 No other positions
TSH516_BNa_lg9 QTL 60.8 No other positions