CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-test
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG10
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - Test [ View Map Set Info ]
Map Name: LG10
Map Start: 0 cM
Map Stop: 72.4 cM
Features by Type:
36 Marker
36 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 36.       of 2 | Next
Cocoa - Test - LG10
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
mTcCIR77 Marker 40.2 Cocoa - Physical map - Tc10 mTcCIR77 Marker 2,687,692 - 2,688,213 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG10 mTcCIR77 Marker 40.2 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG10 mTcCIR77 Marker 25.2 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG10 mTcCIR77 Marker 40.2 (cM) Automated name-based View Maps
mTcCIR91 Marker 51.4 Cocoa - ref_UPA402xUF676 - LG10 mTcCIR91 Marker 51.4 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG10 mTcCIR91 Marker 51.4 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG10 mTcCIR91 Marker 38.9 (cM) Automated name-based View Maps
mTcCIR92 Marker 39.8 Cocoa - SSR_SNP_consensus_map - LG10 mTcCIR92 Marker 25.5 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG10 mTcCIR92 Marker 39.8 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG10 mTcCIR92 Marker 39.8 (cM) Automated name-based View Maps
mTcCIR104 Marker 38.3 Cocoa - SSR_SNP_consensus_map - LG10 mTcCIR104 Marker 25 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG10 mTcCIR104 Marker 39.8 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc10 mTcCIR104 Marker 2,683,374 - 2,683,755 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG10 mTcCIR104 Marker 38.3 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG10 mTcCIR104 Marker 38.3 (cM) Automated name-based View Maps
mTcCIR112 Marker 50.4 Cocoa - SSR_SNP_consensus_map - LG10 mTcCIR112 Marker 38.2 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc10 mTcCIR112 Marker 9,097,451 - 9,097,926 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG10 mTcCIR112 Marker 50.4 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG10 mTcCIR112 Marker 50.4 (cM) Automated name-based View Maps
mTcCIR155 Marker 38.3 Cocoa - Physical map - Tc10 mTcCIR155 Marker 2,777,323 - 2,777,810 (bp) Automated name-based View Maps
Cocoa - TSH516 - LG10 mTcCIR155 Marker 40.5 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG10 mTcCIR155 Marker 38.3 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG10 mTcCIR155 Marker 25 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG10 mTcCIR155 Marker 38.3 (cM) Automated name-based View Maps
mTcCIR220 Marker 26 Cocoa - ref_UPA402xUF676 - LG10 mTcCIR220 Marker 26 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG10 mTcCIR220 Marker 13.8 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc10 mTcCIR220 Marker 1,736,979 - 1,737,306 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG10 mTcCIR220 Marker 26 (cM) Automated name-based View Maps
mTcCIR223 Marker 72.4 Cocoa - ref_UPA402xUF676 - LG10 mTcCIR223 Marker 72.4 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc10 mTcCIR223 Marker 15,067,179 - 15,067,778 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG10 mTcCIR223 Marker 72.4 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG10 mTcCIR223 Marker 4.4 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG10 mTcCIR223 Marker 59.5 (cM) Automated name-based View Maps
mTcCIR229 Marker 11.9 Cocoa - TSH516 - LG10 mTcCIR229 Marker 56.5 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc10 mTcCIR229 Marker 730,966 - 731,386 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG10 mTcCIR229 Marker 3.2 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG10 mTcCIR229 Marker 11.9 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG10 mTcCIR229 Marker 11.9 (cM) Automated name-based View Maps
mTcCIR31 Marker 35.1 Cocoa - SSR_SNP_consensus_map - LG10 mTcCIR31 Marker 22.1 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG10 mTcCIR31 Marker 35.1 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG10 mTcCIR31 Marker 35.1 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc10 mTcCIR31 Marker 2,507,318 - 2,507,780 (bp) Automated name-based View Maps
mTcCIR34 Marker 61.3 Cocoa - consensus_disease_res - LG10 mTcCIR34 Marker 61.3 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG10 mTcCIR34 Marker 61.3 (cM) Automated name-based View Maps
mTcCIR38 Marker 50.6 Cocoa - ref_UPA402xUF676 - LG10 mTcCIR38 Marker 50.6 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG10 mTcCIR38 Marker 39.3 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG10 mTcCIR38 Marker 50.6 (cM) Automated name-based View Maps
gTcCIR113 Marker 46.7 Cocoa - SSR_SNP_consensus_map - LG10 gTcCIR113 Marker 32 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG10 gTcCIR113 Marker 46.7 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG10 gTcCIR113 Marker 46.7 (cM) Automated name-based View Maps
Cocoa - S52xCatongo - LG10 gTcCIR113 Marker 29.3 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc10 gTcCIR113 Marker 4,219,042 - 4,221,286 (bp) Automated name-based View Maps
cTcCIR209 Marker 71.1 Cocoa - consensus_disease_res - LG10 cTcCIR209 Marker 71.1 (cM) Automated name-based View Maps
Cocoa - IMC78xCatongo - LG10 cTcCIR209 Marker 34.5 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG10 cTcCIR209 Marker 71.1 (cM) Automated name-based View Maps
cTcCIR239 Marker 16.3 Cocoa - ref_UPA402xUF676 - LG10 cTcCIR239 Marker 16.3 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG10 cTcCIR239 Marker 16.3 (cM) Automated name-based View Maps
Cocoa - DR1xCatongo - LG10 cTcCIR239 Marker 7.7 (cM) Automated name-based View Maps
gTcCIR105 Marker 9 Cocoa - consensus_disease_res - LG10 gTcCIR105 Marker 9 (cM) Automated name-based View Maps
Cocoa - DR1xCatongo - LG10 gTcCIR105 Marker 0 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG10 gTcCIR105 Marker 9 (cM) Automated name-based View Maps
gTcCIR126 Marker 13.3 Cocoa - SSR_SNP_consensus_map - LG10 gTcCIR126 Marker 5.7 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc10 gTcCIR126 Marker 827,259 - 827,653 (bp) Automated name-based View Maps
Cocoa - DR1xCatongo - LG10 gTcCIR126 Marker 2.9 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG10 gTcCIR126 Marker 13.3 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG10 gTcCIR126 Marker 13.3 (cM) Automated name-based View Maps
cTcCIR254 Marker 17.9 Cocoa - ref_UPA402xUF676 - LG10 cTcCIR254 Marker 17.9 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG10 cTcCIR254 Marker 17.9 (cM) Automated name-based View Maps
cTcCIR50 Marker 18.3 Cocoa - consensus_disease_res - LG10 cTcCIR50 Marker 18.3 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG10 cTcCIR50 Marker 18.3 (cM) Automated name-based View Maps
cTcCIR219 Marker 19.6 Cocoa - ref_UPA402xUF676 - LG10 cTcCIR219 Marker 19.6 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG10 cTcCIR219 Marker 19.6 (cM) Automated name-based View Maps
cTcCIR217 Marker 36.2 Cocoa - ref_UPA402xUF676 - LG10 cTcCIR217 Marker 36.2 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG10 cTcCIR217 Marker 36.2 (cM) Automated name-based View Maps
HistoneC Marker 39 Cocoa - ref_UPA402xUF676 - LG10 HistoneC Marker 39 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG10 HistoneC Marker 39 (cM) Automated name-based View Maps
cTcCIR233 Marker 47.9 Cocoa - consensus_disease_res - LG10 cTcCIR233 Marker 47.9 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG10 cTcCIR233 Marker 47.9 (cM) Automated name-based View Maps
gTcCIR137 Marker 53.9 Cocoa - Physical map - Tc10 gTcCIR137 Marker 11,974,241 - 11,974,358 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG10 gTcCIR137 Marker 42.5 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG10 gTcCIR137 Marker 53.9 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG10 gTcCIR137 Marker 53.9 (cM) Automated name-based View Maps
cTcCIR75 Marker 56 Cocoa - consensus_disease_res - LG10 cTcCIR75 Marker 56 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG10 cTcCIR75 Marker 56 (cM) Automated name-based View Maps
Cocoa - IMC78xCatongo - LG10 cTcCIR75 Marker 10.3 (cM) Automated name-based View Maps