CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-test
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG1
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - Test [ View Map Set Info ]
Map Name: LG1
Map Start: 0 cM
Map Stop: 97.8 cM
Features by Type:
83 Marker
83 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 83.       of 4 | Next
Cocoa - Test - LG1
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
mTcCIR66 Marker 24.2 Cocoa - ref_UPA402xUF676 - LG1 mTcCIR66 Marker 24.2 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR66 Marker 24.8 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc04 mTcCIR66 Marker 1,489,870 - 1,490,280 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR66 Marker 24.2 (cM) Automated name-based View Maps
mTcCIR84 Marker 54.5 Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR84 Marker 50.8 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR84 Marker 54.5 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR84 Marker 54.5 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR84 Marker 19,297,274 - 19,297,422 (bp) Automated name-based View Maps
mTcCIR88 Marker 34.5 Cocoa - ref_UPA402xUF676 - LG1 mTcCIR88 Marker 34.5 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR88 Marker 34.5 (cM) Automated name-based View Maps
mTcCIR94 Marker 27.3 Cocoa - ref_UPA402xUF676 - LG1 mTcCIR94 Marker 27.3 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR94 Marker 27.3 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR94 Marker 5,406,037 - 5,406,472 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR94 Marker 26.2 (cM) Automated name-based View Maps
mTcCIR97 Marker 65.9 Cocoa - ref_UPA402xUF676 - LG1 mTcCIR97 Marker 65.9 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR97 Marker 24,882,340 - 24,883,333 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR97 Marker 65.9 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR97 Marker 63.6 (cM) Automated name-based View Maps
mTcCIR102 Marker 37.7 Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR102 Marker 35.5 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR102 Marker 37.7 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR102 Marker 8,939,604 - 8,939,836 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR102 Marker 37.7 (cM) Automated name-based View Maps
mTcCIR106 Marker 11.7 Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR106 Marker 9.7 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR106 Marker 11.7 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR106 Marker 2,476,580 - 2,477,166 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR106 Marker 11.7 (cM) Automated name-based View Maps
mTcCIR118 Marker 11.8 Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR118 Marker 9.8 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR118 Marker 11.8 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR118 Marker 11.8 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR118 Marker 2,433,177 - 2,433,718 (bp) Automated name-based View Maps
mTcCIR121 Marker 32.5 Cocoa - ref_UPA402xUF676 - LG1 mTcCIR121 Marker 32.5 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR121 Marker 32.5 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR121 Marker 31.4 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR121 Marker 8,076,409 - 8,076,960 (bp) Automated name-based View Maps
mTcCIR130 Marker 61 Cocoa - Physical map - Tc01 mTcCIR130 Marker 23,131,971 - 23,132,455 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR130 Marker 57.7 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR130 Marker 61 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR130 Marker 61 (cM) Automated name-based View Maps
mTcCIR137 Marker 53.2 Cocoa - ref_UPA402xUF676 - LG1 mTcCIR137 Marker 53.2 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR137 Marker 53.2 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR137 Marker 20,953,785 - 20,953,985 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR137 Marker 51.4 (cM) Automated name-based View Maps
mTcCIR138 Marker 35.3 Cocoa - ref_UPA402xUF676 - LG1 mTcCIR138 Marker 35.3 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR138 Marker 35.3 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR138 Marker 8,666,130 - 8,666,372 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR138 Marker 33.6 (cM) Automated name-based View Maps
mTcCIR174 Marker 34.5 Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR174 Marker 32.9 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR174 Marker 34.5 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR174 Marker 34.5 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR174 Marker 7,907,736 - 7,908,253 (bp) Automated name-based View Maps
mTcCIR184 Marker 4.7 Cocoa - consensus_disease_res - LG1 mTcCIR184 Marker 4.7 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR184 Marker 4.7 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR184 Marker 2 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR184 Marker 876,927 - 877,408 (bp) Automated name-based View Maps
mTcCIR194 Marker 95.4 Cocoa - Physical map - Tc01 mTcCIR194 Marker 30,900,743 - 30,901,001 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR194 Marker 95.4 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR194 Marker 95.4 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG1 mTcCIR194 Marker 52.6 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR194 Marker 90.9 (cM) Automated name-based View Maps
mTcCIR203 Marker 52.6 Cocoa - Physical map - Tc09 mTcCIR203 Marker 11,743,488 - 12,660,767 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR203 Marker 51.1 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR203 Marker 52.6 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR203 Marker 52.6 (cM) Automated name-based View Maps
mTcCIR210 Marker 51.8 Cocoa - Physical map - Tc01 mTcCIR210 Marker 19,064,289 - 19,064,969 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR210 Marker 50.1 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR210 Marker 51.8 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR210 Marker 51.8 (cM) Automated name-based View Maps
mTcCIR244 Marker 58.5 Cocoa - consensus_disease_res - LG1 mTcCIR244 Marker 58.5 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG1 mTcCIR244 Marker 15.7 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR244 Marker 58.5 (cM) Automated name-based View Maps
mTcCIR246 Marker 60.5 Cocoa - ref_UPA402xUF676 - LG1 mTcCIR246 Marker 60.5 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG1 mTcCIR246 Marker 17.9 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR246 Marker 23,367,998 - 23,368,193 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR246 Marker 57.4 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR246 Marker 60.5 (cM) Automated name-based View Maps
mTcCIR249 Marker 49.1 Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR249 Marker 46 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR249 Marker 49.1 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR249 Marker 49.1 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG1 mTcCIR249 Marker 8.5 (cM) Automated name-based View Maps
mTcCIR262 Marker 31.1 Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR262 Marker 30.4 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR262 Marker 8,145,674 - 8,146,245 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR262 Marker 31.1 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR262 Marker 31.1 (cM) Automated name-based View Maps
mTcCIR264 Marker 89 Cocoa - Physical map - Tc01 mTcCIR264 Marker 29,843,054 - 29,843,553 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR264 Marker 89 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG1 mTcCIR264 Marker 45.9 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR264 Marker 89 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR264 Marker 84.1 (cM) Automated name-based View Maps
mTcCIR270 Marker 36.9 Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR270 Marker 34.7 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR270 Marker 36.9 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR270 Marker 36.9 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR270 Marker 8,870,787 - 8,871,904 (bp) Automated name-based View Maps
mTcCIR272 Marker 36.9 Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR272 Marker 34.7 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR272 Marker 8,842,807 - 8,843,067 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR272 Marker 36.9 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR272 Marker 36.9 (cM) Automated name-based View Maps
mTcCIR273 Marker 65.3 Cocoa - Physical map - Tc01 mTcCIR273 Marker 24,716,634 - 24,716,895 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR273 Marker 62.9 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG1 mTcCIR273 Marker 21.4 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR273 Marker 65.3 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR273 Marker 65.3 (cM) Automated name-based View Maps