CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-test
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG2
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - Test [ View Map Set Info ]
Map Name: LG2
Map Start: 0 cM
Map Stop: 100.9 cM
Features by Type:
81 Marker
81 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 81.       of 4 | Next
Cocoa - Test - LG2
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
mTcCIR68 Marker 92.8 Cocoa - TSH516 - LG2 mTcCIR68 Marker 92.6 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR68 Marker 92.8 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR68 Marker 92.8 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR68 Marker 94.1 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc02 mTcCIR68 Marker 26,854,246 - 26,854,833 (bp) Automated name-based View Maps
mTcCIR73 Marker 94.9 Cocoa - Physical map - Tc02 mTcCIR73 Marker 27,352,085 - 27,352,439 (bp) Automated name-based View Maps
Cocoa - TSH516 - LG2 mTcCIR73 Marker 99.6 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR73 Marker 96.1 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR73 Marker 94.9 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR73 Marker 94.9 (cM) Automated name-based View Maps
mTcCIR100 Marker 14.8 Cocoa - consensus_disease_res - LG2 mTcCIR100 Marker 14.8 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR100 Marker 14.8 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc02 mTcCIR100 Marker 3,310,551 - 3,311,072 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR100 Marker 22.7 (cM) Automated name-based View Maps
mTcCIR129 Marker 19.7 Cocoa - TSH516 - LG2 mTcCIR129 Marker 23.5 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR129 Marker 27 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR129 Marker 19.7 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc02 mTcCIR129 Marker 4,568,896 - 4,569,242 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR129 Marker 19.7 (cM) Automated name-based View Maps
mTcCIR151 Marker 46.7 Cocoa - ref_UPA402xUF676 - LG2 mTcCIR151 Marker 46.7 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR151 Marker 52.4 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc02 mTcCIR151 Marker 9,385,485 - 9,385,859 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR151 Marker 46.7 (cM) Automated name-based View Maps
mTcCIR162 Marker 60.8 Cocoa - consensus_disease_res - LG2 mTcCIR162 Marker 60.8 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR162 Marker 60.8 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR162 Marker 65.1 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc02 mTcCIR162 Marker 19,241,845 - 19,242,455 (bp) Automated name-based View Maps
Cocoa - TSH516 - LG2 mTcCIR162 Marker 56.9 (cM) Automated name-based View Maps
mTcCIR165 Marker 54.2 Cocoa - consensus_disease_res - LG2 mTcCIR165 Marker 54.2 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR165 Marker 58 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR165 Marker 54.2 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG2 mTcCIR165 Marker 49.3 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc02 mTcCIR165 Marker 14,820,025 - 14,820,530 (bp) Automated name-based View Maps
mTcCIR176 Marker 43.3 Cocoa - Physical map - Tc02 mTcCIR176 Marker 8,419,852 - 8,420,089 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR176 Marker 49 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR176 Marker 43.3 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR176 Marker 43.3 (cM) Automated name-based View Maps
mTcCIR195 Marker 65.9 Cocoa - consensus_disease_res - LG2 mTcCIR195 Marker 65.9 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR195 Marker 65.9 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR195 Marker 72.5 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc02 mTcCIR195 Marker 23,364,131 - 23,364,595 (bp) Automated name-based View Maps
mTcCIR224 Marker 61.2 Cocoa - ref_UPA402xUF676 - LG2 mTcCIR224 Marker 61.2 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR224 Marker 61.2 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc02 mTcCIR224 Marker 21,493,174 - 21,493,629 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR224 Marker 67.1 (cM) Automated name-based View Maps
mTcCIR227 Marker 54 Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR227 Marker 57.6 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc02 mTcCIR227 Marker 14,541,024 - 14,541,648 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR227 Marker 54 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR227 Marker 54 (cM) Automated name-based View Maps
mTcCIR228 Marker 87.2 Cocoa - consensus_disease_res - LG2 mTcCIR228 Marker 87.2 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR228 Marker 87.2 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR228 Marker 90.9 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc02 mTcCIR228 Marker 26,252,963 - 26,253,241 (bp) Automated name-based View Maps
Cocoa - TSH516 - LG2 mTcCIR228 Marker 84.8 (cM) Automated name-based View Maps
mTcCIR230 Marker 84.3 Cocoa - ref_UPA402xUF676 - LG2 mTcCIR230 Marker 84.3 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG2 mTcCIR230 Marker 84.1 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR230 Marker 84.3 (cM) Automated name-based View Maps
mTcCIR240 Marker 11.5 Cocoa - consensus_disease_res - LG2 mTcCIR240 Marker 11.5 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR240 Marker 11.5 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR240 Marker 17.7 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG2 mTcCIR240 Marker 9.2 (cM) Automated name-based View Maps
mTcCIR252 Marker 2.5 Cocoa - consensus_disease_res - LG2 mTcCIR252 Marker 2.5 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG2 mTcCIR252 Marker 0 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR252 Marker 8 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc02 mTcCIR252 Marker 712,221 - 712,428 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR252 Marker 2.5 (cM) Automated name-based View Maps
mTcCIR253 Marker 57.9 Cocoa - consensus_disease_res - LG2 mTcCIR253 Marker 57.9 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR253 Marker 61.2 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc02 mTcCIR253 Marker 17,980,985 - 17,981,378 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR253 Marker 57.9 (cM) Automated name-based View Maps
mTcCIR260 Marker 52.8 Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR260 Marker 56.2 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR260 Marker 52.8 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR260 Marker 52.8 (cM) Automated name-based View Maps
mTcCIR268 Marker 38.8 Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR268 Marker 45.3 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc02 mTcCIR268 Marker 7,606,811 - 7,607,390 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR268 Marker 38.8 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG2 mTcCIR268 Marker 36.8 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR268 Marker 38.8 (cM) Automated name-based View Maps
mTcCIR281 Marker 94.1 Cocoa - ref_UPA402xUF676 - LG2 mTcCIR281 Marker 94.1 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR281 Marker 94.6 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR281 Marker 94.1 (cM) Automated name-based View Maps
mTcCIR3 Marker 17.5 Cocoa - TSH516 - LG2 mTcCIR3 Marker 16.4 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR3 Marker 25 (cM) Automated name-based View Maps
Cocoa - S52xCatongo - LG2 mTcCIR3 Marker 0 (cM) Automated name-based View Maps
Cocoa - DR1xCatongo - LG2 mTcCIR3 Marker 15.1 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR3 Marker 17.5 (cM) Automated name-based View Maps
Cocoa - (Sca6xH)xC1 - LG2 mTcCIR3 Marker 17.6 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR3 Marker 17.5 (cM) Automated name-based View Maps
mTcCIR11 Marker 89.6 Cocoa - S52xCatongo - LG2 mTcCIR11 Marker 82.8 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR11 Marker 89.6 (cM) Automated name-based View Maps
Cocoa - IMC78xCatongo - LG2 mTcCIR11 Marker 95.9 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR11 Marker 89.6 (cM) Automated name-based View Maps
mTcCIR19 Marker 8.7 Cocoa - IMC78xCatongo - LG2 mTcCIR19 Marker 0 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR19 Marker 8.7 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG2 mTcCIR19 Marker 5.1 (cM) Automated name-based View Maps
Cocoa - DR1xCatongo - LG2 mTcCIR19 Marker 3.1 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR19 Marker 14.6 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR19 Marker 8.7 (cM) Automated name-based View Maps
mTcCIR44 Marker 10.5 Cocoa - consensus_disease_res - LG2 mTcCIR44 Marker 10.5 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR44 Marker 10.5 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR44 Marker 16.6 (cM) Automated name-based View Maps
mTcCIR48 Marker 67.1 Cocoa - consensus_disease_res - LG2 mTcCIR48 Marker 67.1 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR48 Marker 67.1 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG2 mTcCIR48 Marker 69.7 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR48 Marker 70.7 (cM) Automated name-based View Maps
mTcCIR60 Marker 51.5 Cocoa - ref_UPA402xUF676 - LG2 mTcCIR60 Marker 51.5 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR60 Marker 51.5 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG2 mTcCIR60 Marker 47.7 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR60 Marker 54.6 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc02 mTcCIR60 Marker 10,932,181 - 10,932,779 (bp) Automated name-based View Maps