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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cotton-CH
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 4
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - CH [ View Map Set Info ]
Map Name: 4
Map Start: 0 cM
Map Stop: 95.6 cM
Features by Type:
11 Marker
11 Total

Map Features

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Items 1 to 11 of 11.
Cotton - CH - 4
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
CIR218 Marker 0 Cotton - T3 - 22 CIR218 Marker 106.92 (cM) Automated name-based View Maps
Cotton - CH - 22 CIR218 Marker 0 (cM) Automated name-based View Maps
Cotton - HDC - 22 CIR218 Marker 98.2 (cM) Automated name-based View Maps
Cotton - GVc - 4 CIR218 Marker 0 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr12 CIR218 Marker Cotton 35,241,043 - 35,241,295 (bp) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c22 CIR218b Marker 0 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c4 CIR218 Marker 35.8 (cM) Automated name-based View Maps
Cotton - HDC - 4 CIR218 Marker 93.6 (cM) Automated name-based View Maps
Cotton - GVc - 22 CIR218 Marker 3.9 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c4 CIR218a Marker 0 (cM) Automated name-based View Maps
CIR381 Marker 24.8 Cotton - HDC - 14 CIR381 Marker 103.4 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c2 CIR381a Marker 0 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c14 CIR381 Marker 16.3 (cM) Automated name-based View Maps
Cotton - GVc - 14 CIR381 Marker 23 (cM) Automated name-based View Maps
Cotton - GVc - 2 CIR381 Marker 0 (cM) Automated name-based View Maps
Cotton - HDC - 2 CIR381 Marker 104.6 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c2 CIR381 Marker 0 (cM) Automated name-based View Maps
Cotton - E3 - 2 CIR381 Marker 29.7 (cM) Automated name-based View Maps
Cotton - HDC - 4 CIR381 Marker 81.5 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c14 CIR381b Marker 25.16 (cM) Automated name-based View Maps
CIR122 Marker 29.2 Cotton - HDC - 21 CIR122 Marker 127.7 (cM) Automated name-based View Maps
Cotton - GVc - 4 CIR122 Marker 15 (cM) Automated name-based View Maps
Cotton - TH - 4 CIR122 Marker 98 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c4 CIR122b Marker 12.76 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr12 CIR122 Marker Cotton 32,909,187 - 32,909,567 (bp) Automated name-based View Maps
Cotton - E3 - 4 CIR122 Marker 16.2 (cM) Automated name-based View Maps
Cotton - CH - 21 CIR122 Marker 109.2 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c4 CIR122 Marker 52.5 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c22 CIR122a Marker 16.29 (cM) Automated name-based View Maps
Cotton - GVc - 22 CIR122 Marker 13 (cM) Automated name-based View Maps
Cotton - HDC - 4 CIR122 Marker 79.4 (cM) Automated name-based View Maps
Cotton - HDC - 22 CIR122 Marker 88.6 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c22 CIR122 Marker 0 (cM) Automated name-based View Maps
BNL2572 Marker 32.6 Cotton - HDC - 4 BNL2572 Marker 81.5 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr12 BNL2572 Marker Cotton 32,796,523 - 32,796,809 (bp) Automated name-based View Maps
Cotton - TH - 4 BNL2572 Marker 95.2 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c4 BNL2572 Marker 52.5 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - c4 BNL2572 Marker 0 (cM) Automated name-based View Maps
Cotton - T3 - 4 BNL2572 Marker 82.71 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c4 BNL2572 Marker 8.87 (cM) Automated name-based View Maps
Cotton - GVc - 4 BNL2572 Marker 12.1 (cM) Automated name-based View Maps
MUCS101 Marker 49.3 Cotton - HDC - 4 CLU1486 Marker 68.4 (cM) Automated name-based View Maps
BNL3433 Marker 54 Cotton - HDC - 4 BNL3433 Marker 65.9 (cM) Automated name-based View Maps
Cotton - PK - c4 BNL3433 Marker 78.2 (cM) Automated name-based View Maps
BNL4047 Marker 62.5 Cotton - Guazuncho2xVH8-RIL - c4 BNL4047 Marker 39.98 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c4 BNL4047 Marker 109.2 (cM) Automated name-based View Maps
Cotton - HDC - 4 BNL4047 Marker 47.3 (cM) Automated name-based View Maps
Cotton - E3 - 4 BNL4047 Marker 90.8 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 BNL4047 Marker Cotton 48,435,195 - 48,435,679 (bp) Automated name-based View Maps
Cotton - TH - 4 BNL4047 Marker 44 (cM) Automated name-based View Maps
Cotton - GVc - 4 BNL4047 Marker 44.8 (cM) Automated name-based View Maps
BNL3988 Marker 64.4 Cotton - HDC - 4 CLU51 Marker 60.3 (cM) Automated name-based View Maps
Cotton - E3 - 4 BNL3988 Marker 74.1 (cM) Automated name-based View Maps
NAU1158 Marker 71.5 Cotton - HDC - 4 CLU225 Marker 54.2 (cM) Automated name-based View Maps
Cotton - TH - 4 NAU1158 Marker 55.8 (cM) Automated name-based View Maps
BNL4049 Marker 89.6 Cotton - Guazuncho2xVH8-BC1 - c4 BNL4049 Marker 66 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c22 BNL4049a Marker 27.06 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c22 BNL4049 Marker 24.4 (cM) Automated name-based View Maps
Cotton - PK - c9 BNL4049 Marker 17.3 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c4 BNL4049b Marker 21.09 (cM) Automated name-based View Maps
Cotton - HDC - 4 BNL4049 Marker 69.4 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - c4 BNL4049 Marker 7.8 (cM) Automated name-based View Maps
Cotton - TH - 22 BNL4049 Marker 79.5 (cM) Automated name-based View Maps
Cotton - GVc - 22 BNL4049 Marker 27.4 (cM) Automated name-based View Maps
Cotton - HDC - 22 BNL4049 Marker 70.9 (cM) Automated name-based View Maps
Cotton - TH - 22 BNL4049 Marker 72.5 (cM) Automated name-based View Maps
Cotton - HDC - 22 BNL4049 Marker 71.9 (cM) Automated name-based View Maps
Cotton - TH - 4 BNL4049 Marker 80.8 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - c22 BNL4049 Marker 12.9 (cM) Automated name-based View Maps
Cotton - HDC - 9 BNL4049 Marker 21.5 (cM) Automated name-based View Maps
Cotton - GVc - 4 BNL4049 Marker 24.7 (cM) Automated name-based View Maps
NAU1267 Marker 95.6 Cotton - TH - 4 NAU1267 Marker 55 (cM) Automated name-based View Maps
Cotton - HDC - 4 CLU3545 Marker 53.7 (cM) Automated name-based View Maps