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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Maize-Genetic_map_CC2
(Reference Set)
Min.
Correspondences
Align Vertically
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Maps 4
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Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Maize - Genetic_map_CC2 [ View Map Set Info ]
Map Name: 4
Map Start: 0 cM
Map Stop: 215.4 cM
Features by Type:
21 Marker
1 QTL
22 Total

Map Features

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Items 1 to 22 of 22.
Maize - Genetic_map_CC2 - 4
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
PHM1505.31 Marker 55.9 No other positions
PZA03597.1 Marker 47.3 No other positions
bt2.4 Marker 43.9 Maize - Genetic_map_LC9 - 4 bt2.4 Marker 64.9 (cM) Automated name-based, Automated name-based View Maps
PZA01905.12 Marker 152.5 Maize - Genetic_map_CC8 - 4 PZA01905.12 Marker 113.9 (cM) Automated name-based, Automated name-based View Maps
PZA02705.1 Marker 42.2 No other positions
PZA00529.4 Marker 135 Maize - Genetic_map_CC8 - 4 PZA00529.4 Marker 101.3 (cM) Automated name-based, Automated name-based View Maps
Maize - Genetic_map_LC9 - 4 PZA00529.4 Marker 150.8 (cM) Automated name-based, Automated name-based View Maps
PZA02358.1 Marker 28.4 No other positions
PHM4117.14 Marker 118 Maize - Genetic_map_LC9 - 4 PHM4117.14 Marker 139.6 (cM) Automated name-based, Automated name-based View Maps
PZA02421.1 Marker 113.3 Maize - Genetic_map_LC9 - 4 PZA02421.1 Marker 139.6 (cM) Automated name-based, Automated name-based View Maps
PZB01461.1 Marker 110.6 No other positions
PZA01289.1 Marker 80.1 No other positions
PZA02767.1 Marker 48.1 No other positions
bt2.7 Marker 47.3 Maize - Genetic_map_LC9 - 4 bt2.7 Marker 65.2 (cM) Automated name-based, Automated name-based View Maps
PZA02239.12 Marker 158.5 Maize - Genetic_map_CC8 - 4 PZA02239.12 Marker 114.6 (cM) Automated name-based, Automated name-based View Maps
Maize - Genetic_map_LC9 - 4 PZA02239.12 Marker 163.7 (cM) Automated name-based, Automated name-based View Maps
PZA01713.4 Marker 42.2 No other positions
PZA03322.3 Marker 137.4 Maize - Genetic_map_CC8 - 4 PZA03322.3 Marker 104.9 (cM) Automated name-based, Automated name-based View Maps
PZA02138.1 Marker 31 Maize - Genetic_map_LC9 - 4 PZA02138.1 Marker 42.8 (cM) Automated name-based, Automated name-based View Maps
PZA00399.11 Marker 118.9 Maize - Genetic_map_CC8 - 4 PZA00399.11 Marker 78 (cM) Automated name-based, Automated name-based View Maps
Maize - Genetic_map_LC9 - 4 PZA00399.11 Marker 139.6 (cM) Automated name-based, Automated name-based View Maps
PZA02614.2 Marker 113.3 No other positions
PZA03205.1 Marker 113.3 Maize - Genetic_map_CC8 - 4 PZA03205.1 Marker 73.2 (cM) Automated name-based, Automated name-based View Maps
PHM3155.14 Marker 80.6 No other positions
583 QTL 202.8 - 215.4 No other positions