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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Maize-Genetic_map_IF
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 2
Start
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Maize - Genetic_map_IF [ View Map Set Info ]
Map Name: 2
Map Start: 0 cM
Map Stop: 145 cM
Features by Type:
19 Marker
2 QTL
21 Total

Map Features

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Items 1 to 21 of 21.
Maize - Genetic_map_IF - 2
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
umc16c Marker 74 No other positions
agp1 Marker 85.43 No other positions
gsy423(TranFa) Marker 93.43 No other positions
umc5a Marker 100 Maize - Genetic_map_Lo1 - 2 umc5a Marker 93.6 (cM) Automated name-based, Automated name-based View Maps
umc44b Marker 14 Maize - Genetic_map_BM3 - 2 umc44b Marker 47.7 (cM) Automated name-based, Automated name-based View Maps
Maize - Genetic_map_C6 - 2 umc44b Marker 66.8 (cM) Automated name-based, Automated name-based View Maps
Maize - Genetic_map_IBM2 - 2 umc44b Marker 157.4 (cM) Automated name-based, Automated name-based View Maps
Maize - Genetic_map_Lo1 - 2 umc44b Marker 52.5 (cM) Automated name-based, Automated name-based View Maps
umc36b Marker 145 Maize - Genetic_map_IBM2 - 2 umc36b Marker 353.1 (cM) Automated name-based, Automated name-based View Maps
Maize - Genetic_map_BM3 - 2 umc36b Marker 107.9 (cM) Automated name-based, Automated name-based View Maps
b1 Marker 20.29 Maize - Genetic_map_IBM2 - 2 b1 Marker 170.4 (cM) Automated name-based, Automated name-based View Maps
gsy134(glr) Marker 46 No other positions
mn1 Marker 59.14 No other positions
csu46b Marker 66.57 No other positions
ptk4 Marker 82 No other positions
umc139a Marker 90 No other positions
umc22a Marker 94.57 No other positions
umc6a Marker 6 Maize - Genetic_map_C5 - 2 umc6a Marker 52.8 (cM) Automated name-based, Automated name-based View Maps
Maize - Genetic_map_C1 - 2 umc6a Marker 55.4 (cM) Automated name-based, Automated name-based View Maps
Maize - Genetic_map_C1old - 2 umc6a Marker 55 (cM) Automated name-based, Automated name-based View Maps
umc4a Marker 135 No other positions
gsy170a(trf) Marker 18 No other positions
ivr1 Marker 30 No other positions
sam2 Marker 48.29 Maize - Genetic_map_PF - 2 sam2 Marker 58.4 (cM) Automated name-based, Automated name-based View Maps
Maize - Genetic_map_IBM2 - 2 sam2 Marker 208.6 (cM) Automated name-based, Automated name-based View Maps
csu143 Marker 64 No other positions
102 QTL 6 No other positions
103 QTL 85.43 - 90 No other positions