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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Cotton-Guazuncho2xVH8-BC2
(Reference Set)
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Correspondences
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Maps c20
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - Guazuncho2xVH8-BC2 [ View Map Set Info ]
Map Name: c20
Map Start: 0 cM
Map Stop: 135.6 cM
Features by Type:
17 Marker
17 Total

Map Features

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Items 1 to 17 of 17.
Cotton - Guazuncho2xVH8-BC2 - c20
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
E4M5_159 Marker 0 Cotton - HDC - 20 E4M5_159 Marker 103.6 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c20 E4M5_159 Marker 63.5 (cM) Automated name-based View Maps
Cotton - GVc - 20 E4M5_159 Marker 67.3 (cM) Automated name-based View Maps
BNL1145 Marker 3.2 Cotton - HDC - 20 BNL1145 Marker 121.4 (cM) Automated name-based View Maps
Cotton - GVc - 20 BNL1145 Marker 45.6 (cM) Automated name-based View Maps
Cotton - T3 - 20 BNL1145 Marker 26.72 (cM) Automated name-based View Maps
Cotton - HDC - 2 BNL1145 Marker 54.3 (cM) Automated name-based View Maps
Cotton - E3 - 20 BNL1145 Marker 122.3 (cM) Automated name-based View Maps
Cotton - CH - 20 BNL1145 Marker 109.1 (cM) Automated name-based View Maps
Cotton - PK - c2 BNL1145 Marker 97.8 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c20 BNL1145 Marker 91 (cM) Automated name-based View Maps
Cotton - PK - c20 BNL1145 Marker 48.1 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c20 BNL1145 Marker 26.63 (cM) Automated name-based View Maps
BNL2570 Marker 15.9 Cotton - E3 - 20 BNL2570 Marker 110.7 (cM) Automated name-based View Maps
Cotton - TH - 20 BNL2570 Marker 45.2 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr11 BNL2570 Marker Cotton 8,916,820 - 8,917,341 (bp) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c20 BNL2570 Marker 36.71 (cM) Automated name-based View Maps
Cotton - CH - 20 BNL2570 Marker 86.5 (cM) Automated name-based View Maps
Cotton - HDC - 20 BNL2570 Marker 114.9 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c20 BNL2570 Marker 100.5 (cM) Automated name-based View Maps
Cotton - T3 - 20 BNL2570 Marker 36.52 (cM) Automated name-based View Maps
Cotton - GVc - 20 BNL2570 Marker 56.3 (cM) Automated name-based View Maps
E4M2_350 Marker 29.2 Cotton - Guazuncho2xVH8-BC1 - c20 E4M2_350 Marker 116.2 (cM) Automated name-based View Maps
Cotton - HDC - 20 E4M2_350 Marker 103.8 (cM) Automated name-based View Maps
Cotton - GVc - 20 E4M2_350 Marker 67.1 (cM) Automated name-based View Maps
E1M5_175 Marker 31 Cotton - HDC - 20 E1M5_175 Marker 109.1 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c20 E1M5_175 Marker 117.5 (cM) Automated name-based View Maps
Cotton - GVc - 20 E1M5_175 Marker 62 (cM) Automated name-based View Maps
E1M6_149 Marker 39.4 Cotton - Guazuncho2xVH8-BC1 - c20 E1M6_149 Marker 120.1 (cM) Automated name-based View Maps
Cotton - GVc - 20 E1M6_149 Marker 69.4 (cM) Automated name-based View Maps
Cotton - HDC - 20 E1M6_149 Marker 101.7 (cM) Automated name-based View Maps
BNL3948 Marker 59.3 Cotton - E3 - 20 BNL3948 Marker 99.8 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c20 BNL3948 Marker 135.2 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr11 BNL3948 Marker Cotton 21,157,864 - 21,158,296 (bp) Automated name-based View Maps
Cotton - PK - c9 BNL3948 Marker 40 (cM) Automated name-based View Maps
Cotton - HDC - 9 BNL3948 Marker 42.2 (cM) Automated name-based View Maps
Cotton - T3 - 20 BNL3948 Marker 60.5 (cM) Automated name-based View Maps
Cotton - HDC - 20 BNL3948 Marker 89.7 (cM) Automated name-based View Maps
Cotton - CH - 20 BNL3948 Marker 58.1 (cM) Automated name-based View Maps
Cotton - GVc - 20 BNL3948 Marker 82.7 (cM) Automated name-based View Maps
E4M5_171 Marker 61.9 No other positions
BNL946 Marker 65.9 Cotton - Guazuncho2xVH8-BC1 - c20 BNL946 Marker 148 (cM) Automated name-based View Maps
Cotton - HDC - 20 BNL0946 Marker 83.6 (cM) Automated name-based View Maps
Cotton - TH - 20 BNL0946 Marker 57.9 (cM) Automated name-based View Maps
Cotton - T3 - 20 BNL0946 Marker 66.32 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c20 BNL0946 Marker 54.9 (cM) Automated name-based View Maps
Cotton - E3 - 20 BNL0946 Marker 93.7 (cM) Automated name-based View Maps
Cotton - CH - 20 BNL0946 Marker 47.2 (cM) Automated name-based View Maps
Cotton - GVc - 20 BNL0946 Marker 89.3 (cM) Automated name-based View Maps
E7M7_291 Marker 66.4 No other positions
E8M8_102 Marker 73.4 Cotton - Guazuncho2xVH8-BC1 - c20 E8M8_102 Marker 158.3 (cM) Automated name-based View Maps
Cotton - GVc - 20 E8M8_102 Marker 93.4 (cM) Automated name-based View Maps
Cotton - HDC - 20 E8M8_102 Marker 81 (cM) Automated name-based View Maps
E4M6_500 Marker 73.9 No other positions
E8M2_272 Marker 77.9 No other positions
BNL169 Marker 95.5 Cotton - Guazuncho2xVH8-RIL - c20 BNL0169 Marker 67.21 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c20 BNL169 Marker 191.5 (cM) Automated name-based View Maps
Cotton - E3 - 20 BNL0169 Marker 77.1 (cM) Automated name-based View Maps
Cotton - GVc - 20 BNL0169 Marker 108.5 (cM) Automated name-based View Maps
Cotton - TH - 20 BNL0169 Marker 71.8 (cM) Automated name-based View Maps
Cotton - T3 - 20 BNL0169 Marker 77.49 (cM) Automated name-based View Maps
Cotton - HDC - 20 BNL0169 Marker 70.8 (cM) Automated name-based View Maps
BNL3280 Marker 118.9 Cotton - HDC - 20 BNL3280 Marker 37.8 (cM) Automated name-based View Maps
Cotton - T3 - 20 BNL3280 Marker 103.42 (cM) Automated name-based View Maps
Cotton - HDC - 18 BNL3280 Marker 56.5 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c18 BNL3280 Marker 93 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr13 BNL3280 Marker Cotton 36,736,808 - 36,737,272 (bp) Automated name-based View Maps
Cotton - CH - 18 BNL3280 Marker 65 (cM) Automated name-based View Maps
Cotton - TH - 20 BNL3280 Marker 107.1 (cM) Automated name-based View Maps
Cotton - GVc - 20 BNL3280 Marker 144.9 (cM) Automated name-based View Maps
Cotton - T3 - 18 BNL3280 Marker 47.32 (cM) Automated name-based View Maps
Cotton - TH - 18 BNL3280 Marker 66.3 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - c18 BNL3280 Marker 50.7 (cM) Automated name-based View Maps
Cotton - E3 - 18 BNL3280 Marker 83.3 (cM) Automated name-based View Maps
Cotton - GVc - 18 BNL3280 Marker 77.1 (cM) Automated name-based View Maps
Cotton - PK - c18 BNL3280 Marker 66.8 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c20 BNL3280b Marker 89.94 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c20 BNL3280 Marker 245.3 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c18 BNL3280a Marker 56.2 (cM) Automated name-based View Maps
E4M3_108 Marker 129.4 Cotton - GVc - 20 E4M3_108 Marker 157.9 (cM) Automated name-based View Maps
Cotton - HDC - 20 E4M3_108 Marker 25.2 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c20 E4M3_108 Marker 263.6 (cM) Automated name-based View Maps
E3M2_174 Marker 135.6 Cotton - Guazuncho2xVH8-BC1 - c20 E3M2_174 Marker 267.5 (cM) Automated name-based View Maps
Cotton - HDC - 20 E3M2_174 Marker 19.7 (cM) Automated name-based View Maps
Cotton - GVc - 20 E3M2_174 Marker 154.1 (cM) Automated name-based View Maps
Cotton - GVc - 20 E3M2_174 Marker 163.5 (cM) Automated name-based View Maps