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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Cotton-Guazuncho2xVH8-RIL
(Reference Set)
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Correspondences
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Maps c18
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - Guazuncho2xVH8-RIL [ View Map Set Info ]
Map Name: c18
Map Start: 0 cM
Map Stop: 99.65 cM
Features by Type:
38 Marker
38 Total

Map Features

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Items 1 to 25 of 38.       of 2 | Next
Cotton - Guazuncho2xVH8-RIL - c18
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
E36M47-M-552.0 Marker 0 No other positions
BNL3281a Marker 3.7 Cotton - GVc - 13 BNL3281 Marker 0 (cM) Automated name-based View Maps
Cotton - E3 - 13 BNL3281 Marker 0 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr13 BNL3281 Marker Cotton 57,969,738 - 57,970,198 (bp) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c13 BNL3281b Marker 0 (cM) Automated name-based View Maps
Cotton - GVc - 18 BNL3281 Marker 5.2 (cM) Automated name-based View Maps
Cotton - CH - 18 BNL3281 Marker 22.5 (cM) Automated name-based View Maps
Cotton - CH - 13 BNL3281 Marker 0 (cM) Automated name-based View Maps
CIR216 Marker 10.62 Cotton - CH - 18 CIR216 Marker 37.1 (cM) Automated name-based View Maps
Cotton - T3 - 18 CIR216 Marker 102.99 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c18 CIR216 Marker 9.4 (cM) Automated name-based View Maps
Cotton - GVc - 18 CIR216 Marker 10 (cM) Automated name-based View Maps
BNL2571b Marker 15.54 Cotton - Guazuncho2xVH8-BC2 - c18 BNL2571 Marker 6 (cM) Automated name-based View Maps
Cotton - TH - 18 BNL2571 Marker 34.6 (cM) Automated name-based View Maps
Cotton - CH - 18 BNL2571 Marker 67.3 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - A01 BNL2571 Marker 14.4 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - A01 BNL2571 Marker 53.6 (cM) Automated name-based View Maps
Cotton - GVc - 18 BNL2571 Marker 23.7 (cM) Automated name-based View Maps
Cotton - CH - 13 BNL2571 Marker 45 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c18 BNL2571 Marker 25.7 (cM) Automated name-based View Maps
Cotton - TH - 13 BNL2571 Marker 22 (cM) Automated name-based View Maps
Cotton - GVc - 13 BNL2571 Marker 31.8 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr13 BNL2571 Marker Cotton 54,054,874 - 54,055,401 (bp) Automated name-based View Maps
E42M48-M364.9 Marker 19.53 No other positions
NAU3130 Marker 20.55 Cotton - Graimondii_physical - Gr_Chr13 NAU3130 Marker Cotton 54,820,106 - 54,820,941 (bp) Automated name-based View Maps
Cotton - GVc - 18 NAU3130 Marker 28.7 (cM) Automated name-based View Maps
Cotton - E3 - 18 NAU3130 Marker 39.7 (cM) Automated name-based View Maps
Cotton - TH - 18 NAU3130 Marker 26.3 (cM) Automated name-based View Maps
NAU3861 Marker 23.65 Cotton - TH - 18 NAU3861 Marker 16.7 (cM) Automated name-based View Maps
Cotton - E3 - 18 NAU3861 Marker 59.8 (cM) Automated name-based View Maps
Cotton - GVc - 18 NAU3861 Marker 31.6 (cM) Automated name-based View Maps
NAU3843 Marker 25.6 Cotton - E3 - 18 NAU3843 Marker 26.1 (cM) Automated name-based View Maps
Cotton - GVc - 18 NAU3843 Marker 33.4 (cM) Automated name-based View Maps
Cotton - TH - 18 NAU3843 Marker 14.3 (cM) Automated name-based View Maps
NAU3447 Marker 27.17 Cotton - E3 - 18 NAU3447 Marker 23.7 (cM) Automated name-based View Maps
Cotton - TH - 18 NAU3447 Marker 11 (cM) Automated name-based View Maps
Cotton - GVc - 18 NAU3447 Marker 34.9 (cM) Automated name-based View Maps
CIR099 Marker 33.64 Cotton - TH - 18 CIR099 Marker 46.8 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c18 CIR099 Marker 43.6 (cM) Automated name-based View Maps
Cotton - GVc - 18 CIR099 Marker 44.8 (cM) Automated name-based View Maps
Cotton - CH - 18 CIR099 Marker 79.9 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr13 CIR099 Marker Cotton 48,804,364 - 48,804,539 (bp) Automated name-based View Maps
MUSS603 Marker 35.94 Cotton - E3 - 18 MUSS603 Marker 69.7 (cM) Automated name-based View Maps
Cotton - GVc - 18 MUSS603 Marker 48.5 (cM) Automated name-based View Maps
Cotton - T3 - 18 MUSS603 Marker 64.52 (cM) Automated name-based View Maps
Gate1CD12a Marker 36.72 Cotton - PK - A01 Gate1CD12 Marker 64 (cM) Automated name-based View Maps
Cotton - PK - c18 Gate1CD12 Marker 44.8 (cM) Automated name-based View Maps
Cotton - GVc - 18 Gate1CD12 Marker 49.4 (cM) Automated name-based View Maps
CIR277a Marker 37.38 Cotton - Graimondii_physical - Gr_Chr13 CIR277 Marker Cotton 48,405,668 - 48,406,046 (bp) Automated name-based View Maps
Cotton - GVc - 19 CIR277 Marker 166.1 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - D08 CIR277 Marker 215 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c18 CIR277 Marker 48.8 (cM) Automated name-based View Maps
Cotton - GVc - 18 CIR277 Marker 48.2 (cM) Automated name-based View Maps
Gate1AG05 Marker 40.48 Cotton - GVc - 18 Gate1AG05 Marker 53.2 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr13 Gate1AG05 Marker Cotton 46,481,707 - 46,482,176 (bp) Automated name-based View Maps
Cotton - PK - A01 Gate1AG05 Marker 72 (cM) Automated name-based View Maps
MUSS203c Marker 45.22 Cotton - Guazuncho2xVH8-RIL - c13 MUSS203a Marker 26.11 (cM) Automated name-based View Maps
Cotton - GVc - 18 MUSS203 Marker 61.2 (cM) Automated name-based View Maps
Cotton - GVc - 13 MUSS203 Marker 78.2 (cM) Automated name-based View Maps
NAU2443 Marker 45.86 Cotton - GVc - 18 NAU2443 Marker 60 (cM) Automated name-based View Maps
Cotton - TH - 18 NAU2443 Marker 62.2 (cM) Automated name-based View Maps
Cotton - T3 - 18 NAU2443 Marker 52.43 (cM) Automated name-based View Maps
E31M55-M415.3 Marker 54.67 Cotton - GVc - 18 E31M55-M415.3 Marker 75.9 (cM) Automated name-based View Maps
BNL3445c Marker 55.29 Cotton - GVc - 18 BNL3445 Marker 76.6 (cM) Automated name-based View Maps
Cotton - GVc - 18 BNL3445 Marker 77.3 (cM) Automated name-based View Maps
Cotton - E3 - 18 BNL3445 Marker 83.7 (cM) Automated name-based View Maps
BNL3445b Marker 55.98 Cotton - GVc - 18 BNL3445 Marker 76.6 (cM) Automated name-based View Maps
Cotton - E3 - 18 BNL3445 Marker 83.7 (cM) Automated name-based View Maps
Cotton - GVc - 18 BNL3445 Marker 77.3 (cM) Automated name-based View Maps
CIR040 Marker 57.67 Cotton - Guazuncho2xVH8-BC1 - c18 CIR040 Marker 99.4 (cM) Automated name-based View Maps
Cotton - GVc - 18 CIR040 Marker 79.4 (cM) Automated name-based View Maps
Cotton - TH - 18 CIR040 Marker 58.4 (cM) Automated name-based View Maps
Cotton - CH - 13 CIR040 Marker 69.8 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr13 CIR040 Marker Cotton 31,943,598 - 31,944,213 (bp) Automated name-based View Maps
Cotton - E3 - 13 CIR040 Marker 78.8 (cM) Automated name-based View Maps
BNL1079 Marker 58.64 Cotton - E3 - 18 BNL1079 Marker 85.7 (cM) Automated name-based View Maps
Cotton - TH - 18 BNL1079 Marker 63.5 (cM) Automated name-based View Maps
Cotton - PK - c18 BNL1079 Marker 80 (cM) Automated name-based View Maps
Cotton - CH - 18 BNL1079 Marker 58.4 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c18 BNL1079 Marker 102 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr13 BNL1079 Marker Cotton 28,244,147 - 28,244,437 (bp) Automated name-based View Maps
Cotton - GVc - 18 BNL1079 Marker 82.1 (cM) Automated name-based View Maps
MUSB1263b Marker 59.64 Cotton - Guazuncho2xVH8-RIL - c13 MUSB1263c Marker 39.39 (cM) Automated name-based View Maps
Cotton - GVc - 13 MUSB1263 Marker 91.2 (cM) Automated name-based View Maps
Cotton - GVc - 13 MUSB1263 Marker 89.7 (cM) Automated name-based View Maps
Cotton - GVc - 18 MUSB1263 Marker 80.7 (cM) Automated name-based View Maps
Cotton - T3 - 13 MUSB1263 Marker 73.54 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr01 MUSB1263 Marker Cotton 50,570,418 - 50,571,252 (bp) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c13 MUSB1263a Marker 37.39 (cM) Automated name-based View Maps
E35M48-M81.8 Marker 60.44 No other positions
E32M50-M279.7 Marker 61.71 No other positions
E43M48-M215.5 Marker 62.23 No other positions