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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set Cocoa-SSR_SNP_consensus_map
(Reference Set)
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Maps LG4
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
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Features:
No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
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Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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Same Scale:
No Yes
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Sanity Check:
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - SSR_SNP_consensus_map [ View Map Set Info ]
Map Name: LG4
Map Start: 0 cM
Map Stop: 64.2 cM
Features by Type:
135 Marker
135 Total

Map Features

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Items 1 to 25 of 135.       of 6 | Next
Cocoa - SSR_SNP_consensus_map - LG4
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TcSNP174 Marker 21.5 Cocoa - Physical map - Tc04 TcSNP174 Marker 11,018,931 - 11,019,360 (bp) Automated name-based View Maps
TcSNP60 Marker 38.2 Cocoa - Physical map - Tc04 TcSNP60 Marker 17,633,648 - 17,635,311 (bp) Automated name-based View Maps
cTcCIR214 Marker 54.3 Cocoa - ref_UPA402xUF676 - LG4 cTcCIR214 Marker 61 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 cTcCIR214 Marker 61 (cM) Automated name-based View Maps
Cocoa - test - LG4 cTcCIR214 Marker 61 (cM) Automated name-based View Maps
TcSNP16 Marker 8.8 Cocoa - Physical map - Tc04 TcSNP16 Marker 1,790,161 - 1,791,996 (bp) Automated name-based View Maps
TcSNP372 Marker 63.4 Cocoa - Physical map - Tc04 TcSNP372 Marker 23,287,781 - 23,288,010 (bp) Automated name-based View Maps
TcSNP74 Marker 15.5 Cocoa - Physical map - Tc04 TcSNP74 Marker 7,313,106 - 7,314,684 (bp) Automated name-based View Maps
TcSNP1115 Marker 29.7 Cocoa - Physical map - Tc04 TcSNP1115 Marker 14,983,795 - 14,988,379 (bp) Automated name-based View Maps
mTcCIR237 Marker 47.4 Cocoa - test - LG4 mTcCIR237 Marker 52.7 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc04 mTcCIR237 Marker 20,145,024 - 20,145,232 (bp) Automated name-based View Maps
Cocoa - TSH516 - LG4 mTcCIR237 Marker 13.8 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG4 mTcCIR237 Marker 52.7 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR237 Marker 52.7 (cM) Automated name-based View Maps
TcSNP1093 Marker 3.1 Cocoa - Physical map - Tc04 TcSNP1093 Marker 695,305 - 697,664 (bp) Automated name-based View Maps
mTcCIR213 Marker 22.3 Cocoa - ref_UPA402xUF676 - LG4 mTcCIR213 Marker 24.1 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc04 mTcCIR213 Marker 11,679,297 - 11,680,231 (bp) Automated name-based View Maps
Cocoa - TSH516 - LG4 mTcCIR213 Marker 47.7 (cM) Automated name-based View Maps
Cocoa - test - LG4 mTcCIR213 Marker 24.1 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR213 Marker 24.1 (cM) Automated name-based View Maps
mTcCIR380 Marker 38.5 Cocoa - Physical map - Tc04 mTcCIR380 Marker 18,195,187 - 18,197,767 (bp) Automated name-based View Maps
mTcCIR233 Marker 55.2 Cocoa - test - LG4 mTcCIR233 Marker 61.6 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG4 mTcCIR233 Marker 61.6 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR233 Marker 61.6 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG4 mTcCIR233 Marker 5.2 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc04 mTcCIR233 Marker 21,565,645 - 21,566,242 (bp) Automated name-based View Maps
TcSNP199 Marker 9.1 Cocoa - Physical map - Tc04 TcSNP199 Marker 2,204,894 - 2,208,079 (bp) Automated name-based View Maps
TcSNP1205 Marker 64.2 Cocoa - Physical map - Tc04 TcSNP1205 Marker 23,087,889 - 23,088,880 (bp) Automated name-based View Maps
TcSNP382 Marker 16.2 Cocoa - Physical map - Tc04 TcSNP382 Marker 7,557,388 - 7,558,387 (bp) Automated name-based View Maps
TcSNP1088 Marker 31.5 Cocoa - Physical map - Tc04 TcSNP1088 Marker 15,451,523 - 15,452,999 (bp) Automated name-based View Maps
TcSNP530 Marker 48.9 Cocoa - Physical map - Tc04 TcSNP530 Marker 20,655,766 - 20,656,471 (bp) Automated name-based View Maps
TcSNP1028 Marker 3.6 Cocoa - Physical map - Tc04 TcSNP1028 Marker 842,979 - 843,444 (bp) Automated name-based View Maps
mTcCIR17 Marker 22.5 Cocoa - ref_UPA402xUF676 - LG4 mTcCIR17 Marker 23.4 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc04 mTcCIR17 Marker 11,965,860 - 11,966,697 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR17 Marker 23.4 (cM) Automated name-based View Maps
Cocoa - test - LG4 mTcCIR17 Marker 23.4 (cM) Automated name-based View Maps
Cocoa - DR1xCatongo - LG4 mTcCIR17 Marker 20.1 (cM) Automated name-based View Maps
TcSNP62 Marker 40.2 Cocoa - Physical map - Tc04 TcSNP62 Marker 18,356,784 - 18,358,960 (bp) Automated name-based View Maps
TcSNP233 Marker 57.1 Cocoa - Physical map - Tc04 TcSNP233 Marker 22,406,327 - 22,407,549 (bp) Automated name-based View Maps
TcSNP1516 Marker 10.1 Cocoa - Physical map - Tc04 TcSNP1516 Marker 2,882,341 - 2,883,083 (bp) Automated name-based View Maps
TcSNP1209 Marker 17.5 Cocoa - Physical map - Tc04 TcSNP1209 Marker 9,222,112 - 9,222,636 (bp) Automated name-based View Maps
mTcCIR188 Marker 31.8 Cocoa - Physical map - Tc04 mTcCIR188 Marker 15,962,961 - 15,963,435 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR188 Marker 34.3 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG4 mTcCIR188 Marker 34.3 (cM) Automated name-based View Maps
Cocoa - test - LG4 mTcCIR188 Marker 34.3 (cM) Automated name-based View Maps
mTcCIR309 Marker 50.5 Cocoa - Physical map - Tc04 mTcCIR309 Marker 20,759,158 - 20,759,808 (bp) Automated name-based View Maps