CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cotton-PK
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps c5
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - PK [ View Map Set Info ]
Map Name: c5
Map Start: 0 cM
Map Stop: 239.6 cM
Features by Type:
166 Marker
12 QTL
178 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 178.       of 8 | Next
Cotton - PK - c5
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
P05_61 Marker 71.3 Cotton - Graimondii_physical - Gr_Chr05 P05_61 Marker Cotton 8,507,105 - 8,507,540 (bp) Automated name-based View Maps
Cotton - PK - c20 P05_61 Marker 27.4 (cM) Automated name-based View Maps
Cotton - HDC - 5 P05_61 Marker 84.9 (cM) Automated name-based View Maps
Cotton - HDC - 20 P05_61 Marker 136.4 (cM) Automated name-based View Maps
P06_26 Marker 65.1 Cotton - HDC - 8 P06_26 Marker 38.4 (cM) Automated name-based View Maps
Cotton - PK - A02 P06_26 Marker 41.3 (cM) Automated name-based View Maps
Cotton - HDC - 5 P06_26 Marker 85.3 (cM) Automated name-based View Maps
P11_63 Marker 68.7 Cotton - HDC - 5 P11_63 Marker 85.1 (cM) Automated name-based View Maps
PAR01C07 Marker 233 Cotton - HDC - 5 pAR01C07 Marker 11.8 (cM) Automated name-based View Maps
Cotton - HDC - 5 pAR01C07 Marker 8.7 (cM) Automated name-based View Maps
PAR01E01 Marker 32.2 Cotton - HDC - 5 pAR01E01 Marker 93.4 (cM) Automated name-based View Maps
Cotton - PK - D08 PAR01E01 Marker 40.7 (cM) Automated name-based View Maps
Cotton - HDC - 19 pAR01E01 Marker 156.9 (cM) Automated name-based View Maps
pAR023 Marker 182.2 Cotton - Graimondii_physical - Gr_Chr12 pAR023 Marker Cotton 5,736,777 - 5,737,621 (bp) Automated name-based View Maps
Cotton - HDC - 5 pAR023 Marker 35.7 (cM) Automated name-based View Maps
Cotton - HDC - 22 pAR023 Marker 35.1 (cM) Automated name-based View Maps
Cotton - PK - c22 pAR023 Marker 58.6 (cM) Automated name-based View Maps
pAR062 Marker 16.9 Cotton - HDC - 5 pAR062 Marker 102.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 pAR062 Marker Cotton 4,089,397 - 4,090,487 (bp) Automated name-based View Maps
PAR07G07 Marker 38.3 Cotton - HDC - 5 pAR07G07 Marker 89.9 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 pAR07G07 Marker Cotton 6,145,541 - 6,146,099 (bp) Automated name-based View Maps
PAR1_08 Marker 53.7 Cotton - PK - c17 PAR1_08 Marker 41.6 (cM) Automated name-based View Maps
pAR1003 Marker 60.7 Cotton - HDC - 5 pAR1003 Marker 85.6 (cM) Automated name-based View Maps
pAR112 Marker 68.7 Cotton - Graimondii_physical - Gr_Chr09 pAR112 Marker Cotton 13,781,306 - 13,781,698 (bp) Automated name-based View Maps
Cotton - HDC - 5 pAR112 Marker 85.1 (cM) Automated name-based View Maps
pAR131 Marker 152.2 Cotton - Graimondii_physical - Gr_Chr12 pAR131 Marker Cotton 9,073,910 - 9,074,624 (bp) Automated name-based View Maps
Cotton - HDC - 5 pAR131 Marker 52.1 (cM) Automated name-based View Maps
A1135 Marker 10.6 Cotton - HDC - 7 A1135 Marker 146 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 A1135 Marker Cotton 2,240,465 - 2,241,338 (bp) Automated name-based View Maps
Cotton - PK - c7 A1135 Marker 218.4 (cM) Automated name-based View Maps
Cotton - HDC - 5 A1135 Marker 105.7 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c5 A1135 Marker 31.3 (cM) Automated name-based View Maps
Cotton - GVc - 5 A1135 Marker 30 (cM) Automated name-based View Maps
PAR2_42 Marker 71.3 Cotton - HDC - 5 pAR02_42 Marker 84.9 (cM) Automated name-based View Maps
A1159 Marker 150.9 Cotton - Graimondii_physical - Gr_Chr12 A1159 Marker Cotton 9,664,111 - 9,665,819 (bp) Automated name-based View Maps
Cotton - HDC - 5 A1159 Marker 53.5 (cM) Automated name-based View Maps
Cotton - HDC - 5 A1159 Marker 52.1 (cM) Automated name-based View Maps
pAR206 Marker 156.5 Cotton - GVc - 22 pAR206 Marker 60.7 (cM) Automated name-based View Maps
Cotton - PK - c22 pAR206 Marker 47.6 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c22 pAR206 Marker 91.3 (cM) Automated name-based View Maps
Cotton - HDC - 5 pAR206 Marker 47.8 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr12 pAR206 Marker Cotton 11,905,205 - 11,906,083 (bp) Automated name-based View Maps
Cotton - HDC - 22 pAR206 Marker 45.6 (cM) Automated name-based View Maps
A1246 Marker 60.7 Cotton - Graimondii_physical - Gr_Chr09 A1246 Marker Cotton 9,303,772 - 9,304,828 (bp) Automated name-based View Maps
Cotton - HDC - 5 A1246 Marker 85.6 (cM) Automated name-based View Maps
pAR335 Marker 83.1 Cotton - HDC - 5 pAR335 Marker 84.1 (cM) Automated name-based View Maps
Cotton - PK - D08 pAR335 Marker 101.7 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr09 pAR335 Marker Cotton 15,144,597 - 15,145,952 (bp) Automated name-based View Maps
Cotton - HDC - 19 pAR335 Marker 110.9 (cM) Automated name-based View Maps
A1459 Marker 155.7 Cotton - Graimondii_physical - Gr_Chr12 A1459 Marker Cotton 12,937,188 - 12,937,898 (bp) Automated name-based View Maps
Cotton - HDC - 5 A1459 Marker 48.2 (cM) Automated name-based View Maps
Cotton - HDC - 22 A1459 Marker 46.2 (cM) Automated name-based View Maps
Cotton - PK - c22 A1459 Marker 46.7 (cM) Automated name-based View Maps
pAR365 Marker 109.8 Cotton - Graimondii_physical - Gr_Chr09 pAR365 Marker Cotton 18,662,020 - 18,662,630 (bp) Automated name-based View Maps
Cotton - HDC - 5 pAR365 Marker 82.2 (cM) Automated name-based View Maps
A1535 Marker 155.7 Cotton - Guazuncho2xVH8-BC1 - c5 A1535 Marker 255.8 (cM) Automated name-based View Maps
Cotton - HDC - 22 A1535 Marker 46.2 (cM) Automated name-based View Maps
Cotton - HDC - 5 A1535 Marker 48.2 (cM) Automated name-based View Maps
Cotton - PK - c22 A1535 Marker 46.7 (cM) Automated name-based View Maps
Cotton - GVc - 5 A1535 Marker 93 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c22 A1535 Marker 91.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr12 A1535 Marker Cotton 12,827,598 - 12,828,720 (bp) Automated name-based View Maps
Cotton - GVc - 22 A1535 Marker 60.1 (cM) Automated name-based View Maps
pAR527 Marker 50.7 Cotton - Graimondii_physical - Gr_Chr09 pAR527 Marker Cotton 6,798,459 - 6,798,958 (bp) Automated name-based View Maps
Cotton - HDC - 5 pAR527 Marker 86.3 (cM) Automated name-based View Maps
A1662 Marker 222 Cotton - HDC - 5 A1662 Marker 17 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - D03 A1662 Marker 115.9 (cM) Automated name-based View Maps
Cotton - HDC - 24 A1662 Marker 112.9 (cM) Automated name-based View Maps
Cotton - GVc - 24 A1662 Marker 81.9 (cM) Automated name-based View Maps
pAR559 Marker 65.1 Cotton - HDC - 5 pAR559 Marker 85.3 (cM) Automated name-based View Maps
A1701 Marker 126.1 Cotton - PK - D08 A1701 Marker 140.3 (cM) Automated name-based View Maps
Cotton - GVc - 5 A1701 Marker 54.9 (cM) Automated name-based View Maps
Cotton - HDC - 5 A1701 Marker 81.1 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c5 A1701 Marker 170.4 (cM) Automated name-based View Maps
Cotton - HDC - 19 A1701 Marker 86.4 (cM) Automated name-based View Maps