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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Rice-Synthetic_map1
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps 5
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker Oryza
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Physical [ View Map Type Info ]
Map Set Name: Rice - Synthetic_map1 [ View Map Set Info ]
Map Name: 5
Map Start: 0 bp
Map Stop: 29,894,789 bp
Features by Type:
253 Marker Oryza
132 QTL
385 Total

Map Features

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Items 1 to 25 of 385.       of 16 | Next
Rice - Synthetic_map1 - 5
(Click headers to resort)		 Comparative Maps
Feature Type Position (bp) Map Feature Type Position Evidence Actions
RM267 Marker Oryza 2,881,317 - 2,881,455 No other positions
E778S Marker Oryza 21,551,990 - 21,552,382 No other positions
RZ556A Marker Oryza 2,091,558 - 2,091,910 No other positions
R2280 Marker Oryza 2,091,597 - 2,091,929 No other positions
C12713S Marker Oryza 21,883,087 - 21,884,096 No other positions
S2593S Marker Oryza 5,747,192 - 5,747,678 No other positions
R832S Marker Oryza 4,926,698 - 4,926,999 No other positions
C624 Marker Oryza 21,372,057 - 21,372,388 No other positions
RM509 Marker Oryza 16,324,617 - 16,324,786 No other positions
OSR35 Marker Oryza 189,783 - 189,862 No other positions
BCD454 Marker Oryza 19,656,039 - 19,656,430 No other positions
S14158 Marker Oryza 493,793 - 494,266 No other positions
R3188 Marker Oryza 12,544,047 - 12,544,321 No other positions
C308 Marker Oryza 21,064,330 - 21,065,025 No other positions
RM122 Marker Oryza 311,059 - 311,297 No other positions
E30066S Marker Oryza 7,553,385 - 7,553,789 No other positions
RM289 Marker Oryza 7,807,745 - 7,807,830 No other positions
EM15_4 Marker Oryza 22,556,049 - 22,557,544 No other positions
RZ67 Marker Oryza 22,556,049 - 22,557,544 No other positions
R2558 Marker Oryza 13,007,996 - 13,008,349 No other positions
C1335 Marker Oryza 28,057,166 - 28,057,670 No other positions
S2692 Marker Oryza 19,525,879 - 19,526,234 No other positions
RG119A Marker Oryza 28,850,701 - 28,851,169 No other positions
C734B Marker Oryza 15,625,445 - 15,625,723 No other positions
RM534 Marker Oryza 24,007,478 - 24,007,721 No other positions