CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-SSR_SNP_consensus_map
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG1
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - SSR_SNP_consensus_map [ View Map Set Info ]
Map Name: LG1
Map Start: 0 cM
Map Stop: 94.1 cM
Features by Type:
201 Marker
201 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 201.       of 9 | Next
Cocoa - SSR_SNP_consensus_map - LG1
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TcSNP468 Marker 48.7 Cocoa - Physical map - Tc01 TcSNP468 Marker 15,698,237 - 15,699,209 (bp) Automated name-based View Maps
TcSNP207 Marker 93.8 Cocoa - Physical map - Tc01 TcSNP207 Marker 31,155,973 - 31,156,450 (bp) Automated name-based View Maps
mTcCIR490 Marker 38.3 Cocoa - Physical map - Tc01 mTcCIR490 Marker 10,235,359 - 10,237,377 (bp) Automated name-based View Maps
mTcCIR342 Marker 74.2 Cocoa - Physical map - Tc04 mTcCIR342 Marker 22,268,320 - 22,268,866 (bp) Automated name-based View Maps
mTcCIR66 Marker 24.8 Cocoa - Physical map - Tc04 mTcCIR66 Marker 1,489,870 - 1,490,280 (bp) Automated name-based View Maps
Cocoa - test - LG1 mTcCIR66 Marker 24.2 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR66 Marker 24.2 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR66 Marker 24.2 (cM) Automated name-based View Maps
cTcCIR48 Marker 58.3 Cocoa - DR1xCatongo - LG1 cTcCIR48 Marker 85.2 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 cTcCIR48 Marker 61.2 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 cTcCIR48 Marker 61.2 (cM) Automated name-based View Maps
Cocoa - test - LG1 cTcCIR48 Marker 61.2 (cM) Automated name-based View Maps
TcSNP1475 Marker 2.9 Cocoa - Physical map - Tc01 TcSNP1475 Marker 832,179 - 833,143 (bp) Automated name-based View Maps
TcSNP1330 Marker 43.5 Cocoa - Physical map - Tc01 TcSNP1330 Marker 13,193,693 - 13,194,305 (bp) Automated name-based View Maps
TcSNP1359 Marker 85.9 Cocoa - Physical map - Tc01 TcSNP1359 Marker 30,690,856 - 30,693,100 (bp) Automated name-based View Maps
mTcCIR262 Marker 30.4 Cocoa - Physical map - Tc01 mTcCIR262 Marker 8,145,674 - 8,146,245 (bp) Automated name-based View Maps
Cocoa - test - LG1 mTcCIR262 Marker 31.1 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR262 Marker 31.1 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR262 Marker 31.1 (cM) Automated name-based View Maps
TcSNP785 Marker 65.5 Cocoa - Physical map - Tc01 TcSNP785 Marker 25,802,873 - 25,806,368 (bp) Automated name-based View Maps
TcSNP786 Marker 14.3 Cocoa - Physical map - Tc01 TcSNP786 Marker 3,394,141 - 3,395,977 (bp) Automated name-based View Maps
mTcCIR203 Marker 51.1 Cocoa - ref_UPA402xUF676 - LG1 mTcCIR203 Marker 52.6 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc09 mTcCIR203 Marker 11,743,488 - 12,660,767 (bp) Automated name-based View Maps
Cocoa - test - LG1 mTcCIR203 Marker 52.6 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR203 Marker 52.6 (cM) Automated name-based View Maps
mTcCIR184 Marker 2 Cocoa - Physical map - Tc01 mTcCIR184 Marker 876,927 - 877,408 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR184 Marker 4.7 (cM) Automated name-based View Maps
Cocoa - test - LG1 mTcCIR184 Marker 4.7 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR184 Marker 4.7 (cM) Automated name-based View Maps
TcSNP534 Marker 48 Cocoa - Physical map - Tc01 TcSNP534 Marker 15,221,923 - 15,224,431 (bp) Automated name-based View Maps
TcSNP1311 Marker 92.8 Cocoa - Physical map - Tc01 TcSNP1311 Marker 31,036,916 - 31,038,703 (bp) Automated name-based View Maps
mTcCIR426 Marker 37.9 Cocoa - Physical map - Tc01 mTcCIR426 Marker 9,718,696 - 9,719,895 (bp) Automated name-based View Maps
TcSNP1398 Marker 73.5 Cocoa - Physical map - Tc01 TcSNP1398 Marker 27,780,432 - 27,781,627 (bp) Automated name-based View Maps
TcSNP578 Marker 23.7 Cocoa - Physical map - Tc01 TcSNP578 Marker 5,109,874 - 5,110,989 (bp) Automated name-based View Maps
mTcCIR412 Marker 58 Cocoa - Physical map - Tc01 mTcCIR412 Marker 24,144,272 - 24,147,200 (bp) Automated name-based View Maps
TcSNP608 Marker 42.5 Cocoa - Physical map - Tc01 TcSNP608 Marker 12,926,423 - 12,927,094 (bp) Automated name-based View Maps
TcSNP67 Marker 82.7 Cocoa - Physical map - Tc01 TcSNP67 Marker 29,508,275 - 29,510,293 (bp) Automated name-based View Maps
TcSNP265 Marker 29.3 Cocoa - Physical map - Tc01 TcSNP265 Marker 6,145,792 - 6,149,802 (bp) Automated name-based View Maps
TcSNP1493 Marker 64.5 Cocoa - Physical map - Tc09 TcSNP1493 Marker 11,868,214 - 11,868,545 (bp) Automated name-based View Maps
TcSNP542 Marker 13.4 Cocoa - Physical map - Tc01 TcSNP542 Marker 3,288,979 - 3,289,756 (bp) Automated name-based View Maps