CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-SSR_SNP_consensus_map
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG2
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - SSR_SNP_consensus_map [ View Map Set Info ]
Map Name: LG2
Map Start: 0 cM
Map Stop: 101.1 cM
Features by Type:
155 Marker
155 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 26 to 50 of 155.       Previous | of 7 | Next
Cocoa - SSR_SNP_consensus_map - LG2
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
mTcCIR482 Marker 60.3 Cocoa - Physical map - Tc02 mTcCIR482 Marker 17,270,150 - 17,272,240 (bp) Automated name-based View Maps
TcSNP533 Marker 49.4 Cocoa - Physical map - Tc02 TcSNP533 Marker 9,339,362 - 9,341,148 (bp) Automated name-based View Maps
TcSNP491 Marker 23.2 Cocoa - Physical map - Tc02 TcSNP491 Marker 3,421,391 - 3,422,106 (bp) Automated name-based View Maps
TcSNP661 Marker 65 Cocoa - Physical map - Tc02 TcSNP661 Marker 19,286,333 - 19,286,987 (bp) Automated name-based View Maps
mTcCIR501 Marker 55.9 Cocoa - Physical map - Tc02 mTcCIR501 Marker 12,637,312 - 12,639,341 (bp) Automated name-based View Maps
mTcCIR506 Marker 38.8 Cocoa - Physical map - Tc02 mTcCIR506 Marker 12,121,898 - 12,123,918 (bp) Automated name-based View Maps
TcSNP885 Marker 98.5 Cocoa - Physical map - Tc02 TcSNP885 Marker 27,339,345 - 27,341,630 (bp) Automated name-based View Maps
TcSNP70 Marker 30.1 Cocoa - Physical map - Tc02 TcSNP70 Marker 5,127,408 - 5,132,186 (bp) Automated name-based View Maps
TcSNP324 Marker 80.9 Cocoa - Physical map - Tc02 TcSNP324 Marker 24,856,959 - 24,859,850 (bp) Automated name-based View Maps
TcSNP1422 Marker 10.4 Cocoa - Physical map - Tc02 TcSNP1422 Marker 904,366 - 904,706 (bp) Automated name-based View Maps
mTcCIR609 Marker 59.6 Cocoa - Physical map - Tc02 mTcCIR609 Marker 16,072,055 - 16,074,070 (bp) Automated name-based View Maps
mTcCIR580 Marker 48 No other positions
TcSNP880 Marker 21.4 Cocoa - Physical map - Tc02 TcSNP880 Marker 3,126,323 - 3,128,669 (bp) Automated name-based View Maps
TcSNP1106 Marker 64.8 Cocoa - Physical map - Tc02 TcSNP1106 Marker 19,171,612 - 19,174,574 (bp) Automated name-based View Maps
mTcCIR601 Marker 55.7 Cocoa - Physical map - Tc02 mTcCIR601 Marker 11,527,792 - 11,529,810 (bp) Automated name-based View Maps
TcSNP1060 Marker 37.1 Cocoa - Physical map - Tc02 TcSNP1060 Marker 5,960,977 - 5,963,363 (bp) Automated name-based View Maps
TcSNP437 Marker 97.7 Cocoa - Physical map - Tc02 TcSNP437 Marker 27,237,411 - 27,238,089 (bp) Automated name-based View Maps
mTcCIR366 Marker 28.2 Cocoa - Physical map - Tc02 mTcCIR366 Marker 4,669,267 - 4,671,966 (bp) Automated name-based View Maps
TcSNP635 Marker 73 Cocoa - Physical map - Tc02 TcSNP635 Marker 22,983,377 - 22,984,081 (bp) Automated name-based View Maps
mTcCIR252 Marker 8 Cocoa - test - LG2 mTcCIR252 Marker 2.5 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG2 mTcCIR252 Marker 2.5 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc02 mTcCIR252 Marker 712,221 - 712,428 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG2 mTcCIR252 Marker 2.5 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG2 mTcCIR252 Marker 0 (cM) Automated name-based View Maps
mTcCIR545 Marker 59 Cocoa - Physical map - Tc02 mTcCIR545 Marker 15,720,906 - 15,722,924 (bp) Automated name-based View Maps
TcSNP1524 Marker 46.6 Cocoa - Physical map - Tc02 TcSNP1524 Marker 8,326,015 - 8,327,400 (bp) Automated name-based View Maps
TcSNP33 Marker 21 Cocoa - Physical map - Tc02 TcSNP33 Marker 2,838,440 - 2,839,070 (bp) Automated name-based View Maps
mTcCIR504 Marker 64.7 Cocoa - Physical map - Tc02 mTcCIR504 Marker 20,001,724 - 20,003,739 (bp) Automated name-based View Maps
mTcCIR523 Marker 55.5 Cocoa - Physical map - Tc02 mTcCIR523 Marker 11,232,286 - 11,234,306 (bp) Automated name-based View Maps