CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-SSR_SNP_consensus_map
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG3
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - SSR_SNP_consensus_map [ View Map Set Info ]
Map Name: LG3
Map Start: 0 cM
Map Stop: 76.9 cM
Features by Type:
162 Marker
162 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 51 to 75 of 162.       Previous | of 7 | Next
Cocoa - SSR_SNP_consensus_map - LG3
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TcSNP222 Marker 42.7 Cocoa - Physical map - Tc03 TcSNP222 Marker 18,665,811 - 18,666,548 (bp) Automated name-based View Maps
TcSNP1062 Marker 18.1 Cocoa - Physical map - Tc03 TcSNP1062 Marker 11,313,395 - 11,314,233 (bp) Automated name-based View Maps
mTcCIR175 Marker 35.9 Cocoa - Physical map - Tc03 mTcCIR175 Marker 16,856,669 - 16,857,138 (bp) Automated name-based View Maps
Cocoa - test - LG3 mTcCIR175 Marker 38.1 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG3 mTcCIR175 Marker 38.1 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG3 mTcCIR175 Marker 48.6 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG3 mTcCIR175 Marker 38.1 (cM) Automated name-based View Maps
TcSNP302 Marker 9.6 Cocoa - Physical map - Tc03 TcSNP302 Marker 2,183,969 - 2,185,471 (bp) Automated name-based View Maps
mTcCIR438 Marker 68.1 Cocoa - Physical map - Tc03 mTcCIR438 Marker 24,396,175 - 24,396,891 (bp) Automated name-based View Maps
TcSNP1354 Marker 50.8 Cocoa - Physical map - Tc03 TcSNP1354 Marker 21,014,018 - 21,015,264 (bp) Automated name-based View Maps
TcSNP795 Marker 75.6 Cocoa - Physical map - Tc03 TcSNP795 Marker 25,168,621 - 25,171,532 (bp) Automated name-based View Maps
C65 Marker 24.1 Cocoa - Physical map - Tc03 C65 Marker 14,223,598 - 14,223,777 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG3 C65 Marker 24 (cM) Automated name-based View Maps
Cocoa - test - LG3 C65 Marker 24 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG3 C65 Marker 24 (cM) Automated name-based View Maps
mTcCIR146 Marker 14.8 Cocoa - TSH516 - LG3 mTcCIR146 Marker 70 (cM) Automated name-based View Maps
TcSNP141 Marker 59.1 Cocoa - Physical map - Tc03 TcSNP141 Marker 21,341,002 - 21,342,317 (bp) Automated name-based View Maps
TcSNP1018 Marker 0.2 Cocoa - Physical map - Tc03 TcSNP1018 Marker 5,096 - 10,256 (bp) Automated name-based View Maps
TcSNP383 Marker 35.2 Cocoa - Physical map - Tc03 TcSNP383 Marker 16,742,027 - 16,743,628 (bp) Automated name-based View Maps
mTcCIR289 Marker 42.5 Cocoa - TSH516 - LG3 mTcCIR289 Marker 39.8 (cM) Automated name-based View Maps
Cocoa - test - LG3 mTcCIR289 Marker 45.4 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc03 mTcCIR289 Marker 17,220,043 - 17,220,480 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG3 mTcCIR289 Marker 45.4 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG3 mTcCIR289 Marker 45.4 (cM) Automated name-based View Maps
cTcCIR49 Marker 68.1 Cocoa - ref_UPA402xUF676 - LG3 cTcCIR49 Marker 72.2 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG3 cTcCIR49 Marker 72.2 (cM) Automated name-based View Maps
Cocoa - test - LG3 cTcCIR49 Marker 72.2 (cM) Automated name-based View Maps
TcSNP945 Marker 17.4 Cocoa - Physical map - Tc03 TcSNP945 Marker 8,746,487 - 8,748,736 (bp) Automated name-based View Maps
TcSNP633 Marker 49.5 Cocoa - Physical map - Tc03 TcSNP633 Marker 19,621,201 - 19,624,109 (bp) Automated name-based View Maps
mTcCIR153 Marker 9.2 Cocoa - TSH516 - LG3 mTcCIR153 Marker 77.5 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG3 mTcCIR153 Marker 9 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc03 mTcCIR153 Marker 2,362,791 - 2,363,149 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG3 mTcCIR153 Marker 9 (cM) Automated name-based View Maps
Cocoa - test - LG3 mTcCIR153 Marker 9 (cM) Automated name-based View Maps
TcSNP291 Marker 75 Cocoa - Physical map - Tc03 TcSNP291 Marker 24,985,558 - 24,989,847 (bp) Automated name-based View Maps
mTcCIR405 Marker 22.7 Cocoa - Physical map - Tc03 mTcCIR405 Marker 14,019,175 - 14,019,574 (bp) Automated name-based View Maps
TcSNP143 Marker 58.4 Cocoa - Physical map - Tc03 TcSNP143 Marker 21,544,847 - 21,545,343 (bp) Automated name-based View Maps
mTcCIR581 Marker 14.8 Cocoa - Physical map - Tc03 mTcCIR581 Marker 6,632,275 - 6,634,303 (bp) Automated name-based View Maps
mTcCIR164 Marker 33.8 Cocoa - ref_UPA402xUF676 - LG3 mTcCIR164 Marker 35.6 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG3 mTcCIR164 Marker 35.6 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc03 mTcCIR164 Marker 16,443,240 - 16,443,733 (bp) Automated name-based View Maps
Cocoa - test - LG3 mTcCIR164 Marker 35.6 (cM) Automated name-based View Maps
mTcCIR280 Marker 42.3 Cocoa - ref_UPA402xUF676 - LG3 mTcCIR280 Marker 45.1 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc03 mTcCIR280 Marker 17,373,371 - 17,373,669 (bp) Automated name-based View Maps
Cocoa - test - LG3 mTcCIR280 Marker 45.1 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG3 mTcCIR280 Marker 45.1 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG3 mTcCIR280 Marker 40.8 (cM) Automated name-based View Maps
TcSNP1353 Marker 66.7 Cocoa - Physical map - Tc03 TcSNP1353 Marker 23,315,211 - 23,317,551 (bp) Automated name-based View Maps
mTcCIR040 Marker 17.1 Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR022 Marker 86.5 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR015 Marker 16.2 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc03 mTcCIR040 Marker 10,306,809 - 10,307,429 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG6 mTcCIR006 Marker 4.5 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG10 mTcCIR037 Marker 56.1 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG9 mTcCIR008 Marker 48.5 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR011 Marker 89.4 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG7 mTcCIR007 Marker 27.4 (cM) Automated name-based View Maps