CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-SSR_SNP_consensus_map
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG6
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - SSR_SNP_consensus_map [ View Map Set Info ]
Map Name: LG6
Map Start: 0 cM
Map Stop: 64 cM
Features by Type:
81 Marker
81 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 26 to 50 of 81.       Previous | of 4 | Next
Cocoa - SSR_SNP_consensus_map - LG6
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TcSNP497 Marker 50.6 No other positions
TcSNP1283 Marker 6.3 Cocoa - Physical map - Tc06 TcSNP1283 Marker 1,127,904 - 1,130,778 (bp) Automated name-based View Maps
mTcCIR436 Marker 23.4 Cocoa - Physical map - Tc06 mTcCIR436 Marker 8,211,305 - 8,213,772 (bp) Automated name-based View Maps
TcSNP700 Marker 16 Cocoa - Physical map - Tc06 TcSNP700 Marker 4,773,936 - 4,776,190 (bp) Automated name-based View Maps
TcSNP1376 Marker 35 Cocoa - Physical map - Tc06 TcSNP1376 Marker 10,963,355 - 10,964,057 (bp) Automated name-based View Maps
mTcCIR464 Marker 52.8 Cocoa - Physical map - Tc06 mTcCIR464 Marker 13,516,185 - 13,518,213 (bp) Automated name-based View Maps
TcSNP1200 Marker 7.5 Cocoa - Physical map - Tc06 TcSNP1200 Marker 627,036 - 627,759 (bp) Automated name-based View Maps
mTcCIR315 Marker 23.9 Cocoa - Physical map - Tc06 mTcCIR315 Marker 8,867,460 - 8,868,518 (bp) Automated name-based View Maps
TcSNP994 Marker 37.2 Cocoa - Physical map - Tc06 TcSNP994 Marker 11,506,826 - 11,508,801 (bp) Automated name-based View Maps
TcSNP1212 Marker 16.4 Cocoa - Physical map - Tc06 TcSNP1212 Marker 5,559,826 - 5,564,197 (bp) Automated name-based View Maps
TcSNP1266 Marker 54.9 Cocoa - Physical map - Tc06 TcSNP1266 Marker 14,553,910 - 14,555,822 (bp) Automated name-based View Maps
mTcCIR182 Marker 8.3 Cocoa - test - LG6 mTcCIR182 Marker 4.1 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc06 mTcCIR182 Marker 1,771,809 - 1,772,173 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG6 mTcCIR182 Marker 4.1 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 mTcCIR182 Marker 4.1 (cM) Automated name-based View Maps
mTcCIR374 Marker 26.9 Cocoa - Physical map - Tc06 mTcCIR374 Marker 9,274,177 - 9,276,635 (bp) Automated name-based View Maps
TcSNP1374 Marker 39.4 Cocoa - Physical map - Tc06 TcSNP1374 Marker 11,995,012 - 11,996,752 (bp) Automated name-based View Maps
mTcCIR584 Marker 17.6 Cocoa - Physical map - Tc06 mTcCIR584 Marker 6,199,375 - 6,201,399 (bp) Automated name-based View Maps
mTcCIR52 Marker 56.2 Cocoa - consensus_disease_res - LG6 mTcCIR52 Marker 55 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 mTcCIR52 Marker 55 (cM) Automated name-based View Maps
Cocoa - test - LG6 mTcCIR52 Marker 55 (cM) Automated name-based View Maps
Cocoa - (Sca6xH)xC1 - LG6 mTcCIR52 Marker 65.2 (cM) Automated name-based View Maps
TcSNP602 Marker 8.9 Cocoa - Physical map - Tc06 TcSNP602 Marker 1,131,800 - 1,132,921 (bp) Automated name-based View Maps
TcSNP756 Marker 28.2 Cocoa - Physical map - Tc06 TcSNP756 Marker 9,360,082 - 9,360,618 (bp) Automated name-based View Maps
mTcCIR301 Marker 40.9 Cocoa - Physical map - Tc06 mTcCIR301 Marker 12,250,023 - 12,251,065 (bp) Automated name-based View Maps
mTcCIR299 Marker 18.1 Cocoa - Physical map - Tc06 mTcCIR299 Marker 6,573,420 - 6,574,786 (bp) Automated name-based View Maps
TcSNP1164 Marker 58 Cocoa - Physical map - Tc06 TcSNP1164 Marker 14,813,214 - 14,815,966 (bp) Automated name-based View Maps
mTcCIR208 Marker 12.2 Cocoa - Physical map - Tc06 mTcCIR208 Marker 2,954,713 - 2,955,854 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 mTcCIR208 Marker 8.1 (cM) Automated name-based View Maps
Cocoa - test - LG6 mTcCIR208 Marker 8.1 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG6 mTcCIR208 Marker 8.1 (cM) Automated name-based View Maps
mTcCIR235 Marker 29 Cocoa - test - LG6 mTcCIR235 Marker 23.8 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc06 mTcCIR235 Marker 9,697,929 - 9,698,349 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG6 mTcCIR235 Marker 23.8 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 mTcCIR235 Marker 23.8 (cM) Automated name-based View Maps
mTcCIR398 Marker 42.2 Cocoa - Physical map - Tc06 mTcCIR398 Marker 12,157,896 - 12,160,309 (bp) Automated name-based View Maps
mTcCIR533 Marker 18.6 Cocoa - Physical map - Tc06 mTcCIR533 Marker 7,568,002 - 7,570,022 (bp) Automated name-based View Maps