CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-SSR_SNP_consensus_map
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG7
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - SSR_SNP_consensus_map [ View Map Set Info ]
Map Name: LG7
Map Start: 0 cM
Map Stop: 52.6 cM
Features by Type:
62 Marker
62 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 62.       of 3 | Next
Cocoa - SSR_SNP_consensus_map - LG7
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
mTcCIR113 Marker 8.9 Cocoa - test - LG7 mTcCIR113 Marker 5.4 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc07 mTcCIR113 Marker 677,729 - 678,000 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG7 mTcCIR113 Marker 5.4 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG7 mTcCIR113 Marker 5.4 (cM) Automated name-based View Maps
mTcCIR578 Marker 41.8 No other positions
mTcCIR110 Marker 25.5 Cocoa - ref_UPA402xUF676 - LG7 mTcCIR110 Marker 23.4 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc07 mTcCIR110 Marker 5,342,394 - 5,354,252 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG7 mTcCIR110 Marker 23.4 (cM) Automated name-based View Maps
Cocoa - test - LG7 mTcCIR110 Marker 23.4 (cM) Automated name-based View Maps
mTcCIR485 Marker 51 Cocoa - Physical map - Tc07 mTcCIR485 Marker 13,680,893 - 13,682,954 (bp) Automated name-based View Maps
TcSNP1242 Marker 12.7 Cocoa - Physical map - Tc07 TcSNP1242 Marker 1,732,305 - 1,734,616 (bp) Automated name-based View Maps
TcSNP754 Marker 43.2 Cocoa - Physical map - Tc07 TcSNP754 Marker 8,454,958 - 8,456,648 (bp) Automated name-based View Maps
mTcCIR46 Marker 26.8 Cocoa - consensus_disease_res - LG7 mTcCIR46 Marker 25.4 (cM) Automated name-based View Maps
Cocoa - test - LG7 mTcCIR46 Marker 25.4 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG7 mTcCIR46 Marker 25.4 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG7 mTcCIR46 Marker 28 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc07 mTcCIR46 Marker 5,794,657 - 5,795,333 (bp) Automated name-based View Maps
TcSNP329 Marker 51.4 Cocoa - Physical map - Tc07 TcSNP329 Marker 13,348,879 - 13,352,127 (bp) Automated name-based View Maps
gTcCIR155 Marker 14.7 Cocoa - ref_UPA402xUF676 - LG7 gTcCIR155 Marker 12.3 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc07 gTcCIR155 Marker 1,413,429 - 1,413,562 (bp) Automated name-based View Maps
Cocoa - test - LG7 gTcCIR155 Marker 12.3 (cM) Automated name-based View Maps
Cocoa - IMC78xCatongo - LG7 gTcCIR155 Marker 9.7 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG7 gTcCIR155 Marker 12.3 (cM) Automated name-based View Maps
TcSNP1197 Marker 44.8 No other positions
mTcCIR007 Marker 27.4 Cocoa - SSR_SNP_consensus_map - LG3 mTcCIR040 Marker 17.1 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG9 mTcCIR008 Marker 48.5 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc07 mTcCIR007 Marker 5,714,019 - 5,714,237 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG6 mTcCIR006 Marker 4.5 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG2 mTcCIR011 Marker 89.4 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR015 Marker 16.2 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG10 mTcCIR037 Marker 56.1 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR022 Marker 86.5 (cM) Automated name-based View Maps
mTcCIR612 Marker 52.6 No other positions
gTcCIR152 Marker 16.9 Cocoa - ref_UPA402xUF676 - LG7 gTcCIR152 Marker 15.1 (cM) Automated name-based View Maps
Cocoa - test - LG7 gTcCIR152 Marker 15.1 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG7 gTcCIR152 Marker 15.1 (cM) Automated name-based View Maps
TcSNP1201 Marker 45.2 Cocoa - Physical map - Tc07 TcSNP1201 Marker 9,947,529 - 9,948,917 (bp) Automated name-based View Maps
TcSNP15 Marker 29.8 Cocoa - Physical map - Tc07 TcSNP15 Marker 5,775,221 - 5,776,152 (bp) Automated name-based View Maps
TcSNP701 Marker 18 No other positions
mTcCIR607 Marker 45.9 Cocoa - Physical map - Tc07 mTcCIR607 Marker 10,641,310 - 10,643,326 (bp) Automated name-based View Maps
TcSNP573 Marker 2 Cocoa - Physical map - Tc07 TcSNP573 Marker 221,806 - 222,322 (bp) Automated name-based View Maps
mTcCIR56 Marker 34.1 Cocoa - consensus_disease_res - LG7 mTcCIR56 Marker 33 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG7 mTcCIR56 Marker 33 (cM) Automated name-based View Maps
Cocoa - test - LG7 mTcCIR56 Marker 33 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG7 mTcCIR56 Marker 32.2 (cM) Automated name-based View Maps
gTcCIR125 Marker 20.1 Cocoa - consensus_disease_res - LG7 gTcCIR125 Marker 18.5 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG7 gTcCIR125 Marker 18.5 (cM) Automated name-based View Maps
Cocoa - test - LG7 gTcCIR125 Marker 18.5 (cM) Automated name-based View Maps
mTcCIR476 Marker 47.3 Cocoa - Physical map - Tc07 mTcCIR476 Marker 10,820,611 - 10,822,627 (bp) Automated name-based View Maps
C173 Marker 4.1 Cocoa - Physical map - Tc07 C173 Marker 82,728 - 82,890 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG7 C173 Marker 0 (cM) Automated name-based View Maps
Cocoa - test - LG7 C173 Marker 0 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG7 C173 Marker 0 (cM) Automated name-based View Maps
mTcCIR55 Marker 36.8 Cocoa - test - LG7 mTcCIR55 Marker 35.5 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG7 mTcCIR55 Marker 35.5 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG7 mTcCIR55 Marker 35.5 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG7 mTcCIR55 Marker 34.4 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc07 mTcCIR55 Marker 6,803,910 - 6,804,968 (bp) Automated name-based View Maps
mTcCIR397 Marker 21.8 Cocoa - Physical map - Tc07 mTcCIR397 Marker 3,859,415 - 3,860,575 (bp) Automated name-based View Maps
mTcCIR277 Marker 48.9 Cocoa - test - LG7 mTcCIR277 Marker 47.5 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc07 mTcCIR277 Marker 11,348,363 - 11,348,933 (bp) Automated name-based View Maps
Cocoa - TSH516 - LG7 mTcCIR277 Marker 40.9 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG7 mTcCIR277 Marker 47.5 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG7 mTcCIR277 Marker 47.5 (cM) Automated name-based View Maps