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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set Cocoa-SSR_SNP_consensus_map
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Correspondence		 Always Display
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Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Size of Dot Plot Pixels: 1
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Same Scale:		 No Yes
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Menu Order of Comparative Maps: Predefined
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Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - SSR_SNP_consensus_map [ View Map Set Info ]
Map Name: LG8
Map Start: 0 cM
Map Stop: 59.2 cM
Features by Type:
73 Marker
73 Total

Map Features

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Items 1 to 25 of 73.       of 3 | Next
Cocoa - SSR_SNP_consensus_map - LG8
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
mTcCIR26 Marker 35.3 Cocoa - test - LG8 mTcCIR26 Marker 35.6 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG8 mTcCIR26 Marker 16.2 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 mTcCIR26 Marker 35.6 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG8 mTcCIR26 Marker 35.6 (cM) Automated name-based View Maps
Cocoa - (Sca6xH)xC1 - LG8 mTcCIR26 Marker 16.9 (cM) Automated name-based View Maps
mTcCIR163 Marker 10.3 Cocoa - test - LG8 mTcCIR163 Marker 10.6 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc08 mTcCIR163 Marker 1,231,157 - 1,231,508 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 mTcCIR163 Marker 10.6 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG8 mTcCIR163 Marker 10.6 (cM) Automated name-based View Maps
mTcCIR70 Marker 27.9 Cocoa - test - LG8 mTcCIR70 Marker 27.8 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG8 mTcCIR70 Marker 27.8 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc08 mTcCIR70 Marker 4,095,057 - 4,095,278 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 mTcCIR70 Marker 27.8 (cM) Automated name-based View Maps
TcSNP1472 Marker 45.4 Cocoa - Physical map - Tc08 TcSNP1472 Marker 8,231,779 - 8,233,070 (bp) Automated name-based View Maps
TcSNP1103 Marker 13.3 Cocoa - Physical map - Tc08 TcSNP1103 Marker 1,410,440 - 1,412,832 (bp) Automated name-based View Maps
TcSNP800 Marker 36.8 Cocoa - Physical map - Tc08 TcSNP800 Marker 6,135,315 - 6,136,660 (bp) Automated name-based View Maps
mTcCIR200 Marker 29.7 Cocoa - ref_UPA402xUF676 - LG8 mTcCIR200 Marker 30 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc08 mTcCIR200 Marker 4,510,432 - 4,510,748 (bp) Automated name-based View Maps
Cocoa - TSH516 - LG8 mTcCIR200 Marker 22.4 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG8 mTcCIR200 Marker 30 (cM) Automated name-based View Maps
Cocoa - test - LG8 mTcCIR200 Marker 30 (cM) Automated name-based View Maps
TcSNP642 Marker 46.1 Cocoa - Physical map - Tc08 TcSNP642 Marker 8,542,423 - 8,544,972 (bp) Automated name-based View Maps
TcSNP508 Marker 13.7 Cocoa - Physical map - Tc08 TcSNP508 Marker 1,498,208 - 1,498,899 (bp) Automated name-based View Maps
TcSNP1309 Marker 37.6 Cocoa - Physical map - Tc08 TcSNP1309 Marker 6,824,332 - 6,826,731 (bp) Automated name-based View Maps
TcSNP1362 Marker 31 Cocoa - Physical map - Tc08 TcSNP1362 Marker 4,707,794 - 4,710,215 (bp) Automated name-based View Maps
mTcCIR348 Marker 46.3 Cocoa - Physical map - Tc08 mTcCIR348 Marker 8,640,924 - 8,643,451 (bp) Automated name-based View Maps
mTcCIR444 Marker 20.1 Cocoa - Physical map - Tc08 mTcCIR444 Marker 2,203,376 - 2,205,973 (bp) Automated name-based View Maps
mTcCIR373 Marker 37.6 Cocoa - Physical map - Tc08 mTcCIR373 Marker 6,712,030 - 6,712,608 (bp) Automated name-based View Maps
mTcCIR303 Marker 31.4 Cocoa - Physical map - Tc08 mTcCIR303 Marker 5,025,652 - 5,027,089 (bp) Automated name-based View Maps
mTcCIR579 Marker 48.3 Cocoa - Physical map - Tc08 mTcCIR579 Marker 9,007,075 - 9,009,092 (bp) Automated name-based View Maps
mTcCIR99 Marker 2.1 Cocoa - ref_UPA402xUF676 - LG8 mTcCIR99 Marker 2 (cM) Automated name-based View Maps
Cocoa - test - LG8 mTcCIR99 Marker 2 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG8 mTcCIR99 Marker 2 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc08 mTcCIR99 Marker 373,748 - 374,326 (bp) Automated name-based View Maps
mTcCIR225 Marker 21.6 Cocoa - TSH516 - LG8 mTcCIR225 Marker 34.5 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc08 mTcCIR225 Marker 2,343,118 - 2,343,797 (bp) Automated name-based View Maps
Cocoa - test - LG8 mTcCIR225 Marker 21.1 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 mTcCIR225 Marker 21.1 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG8 mTcCIR225 Marker 21.1 (cM) Automated name-based View Maps
TcSNP1230 Marker 37.9 Cocoa - Physical map - Tc08 TcSNP1230 Marker 6,821,612 - 6,824,343 (bp) Automated name-based View Maps
TcSNP1124 Marker 32.1 Cocoa - Physical map - Tc08 TcSNP1124 Marker 4,994,676 - 4,998,108 (bp) Automated name-based View Maps
TcSNP899 Marker 50.9 Cocoa - Physical map - Tc08 TcSNP899 Marker 9,554,750 - 9,556,401 (bp) Automated name-based View Maps
mTcCIR75 Marker 4.3 Cocoa - Physical map - Tc08 mTcCIR75 Marker 797,201 - 797,698 (bp) Automated name-based View Maps
Cocoa - test - LG8 mTcCIR75 Marker 4.9 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 mTcCIR75 Marker 4.9 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG8 mTcCIR75 Marker 4.9 (cM) Automated name-based View Maps
mTcCIR211 Marker 23.6 Cocoa - consensus_disease_res - LG8 mTcCIR211 Marker 22.7 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG8 mTcCIR211 Marker 32.6 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc08 mTcCIR211 Marker 2,618,157 - 2,618,571 (bp) Automated name-based View Maps
Cocoa - test - LG8 mTcCIR211 Marker 22.7 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG8 mTcCIR211 Marker 22.7 (cM) Automated name-based View Maps
mTcCIR554 Marker 38.3 Cocoa - Physical map - Tc08 mTcCIR554 Marker 7,278,028 - 7,280,054 (bp) Automated name-based View Maps
TcSNP190 Marker 32.1 Cocoa - Physical map - Tc08 TcSNP190 Marker 5,043,503 - 5,043,697 (bp) Automated name-based View Maps