CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-SSR_SNP_consensus_map
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG9
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - SSR_SNP_consensus_map [ View Map Set Info ]
Map Name: LG9
Map Start: 0 cM
Map Stop: 100.9 cM
Features by Type:
182 Marker
182 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 182.       of 8 | Next
Cocoa - SSR_SNP_consensus_map - LG9
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TcSNP528 Marker 54.7 Cocoa - Physical map - Tc09 TcSNP528 Marker 22,156,223 - 22,158,707 (bp) Automated name-based View Maps
mTcCIR424 Marker 8.1 Cocoa - Physical map - Tc09 mTcCIR424 Marker 1,191,675 - 1,192,618 (bp) Automated name-based View Maps
TcSNP1305 Marker 46.3 Cocoa - Physical map - Tc09 TcSNP1305 Marker 12,350,903 - 12,351,212 (bp) Automated name-based View Maps
mTcCIR417 Marker 93.2 No other positions
TcSNP328 Marker 20.8 Cocoa - Physical map - Tc09 TcSNP328 Marker 3,933,772 - 3,935,993 (bp) Automated name-based View Maps
mTcCIR64 Marker 70.2 Cocoa - test - LG9 mTcCIR64 Marker 71.5 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG9 mTcCIR64 Marker 24 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc09 mTcCIR64 Marker 24,083,880 - 24,084,545 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG9 mTcCIR64 Marker 71.5 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG9 mTcCIR64 Marker 71.5 (cM) Automated name-based View Maps
TcSNP1131 Marker 13.5 Cocoa - Physical map - Tc09 TcSNP1131 Marker 2,454,013 - 2,455,922 (bp) Automated name-based View Maps
TcSNP25 Marker 62.7 Cocoa - Physical map - Tc09 TcSNP25 Marker 23,099,697 - 23,100,149 (bp) Automated name-based View Maps
TcSNP341 Marker 33.6 No other positions
TcSNP861 Marker 48.7 Cocoa - Physical map - Tc09 TcSNP861 Marker 16,262,804 - 16,265,486 (bp) Automated name-based View Maps
TcSNP339 Marker 80.2 Cocoa - Physical map - Tc09 TcSNP339 Marker 26,479,716 - 26,484,252 (bp) Automated name-based View Maps
TcSNP604 Marker 7.4 Cocoa - Physical map - Tc09 TcSNP604 Marker 1,529,528 - 1,531,307 (bp) Automated name-based View Maps
mTcCIR559 Marker 44.5 Cocoa - Physical map - Tc09 mTcCIR559 Marker 12,091,968 - 12,094,012 (bp) Automated name-based View Maps
TcSNP1397 Marker 52.4 Cocoa - Physical map - Tc09 TcSNP1397 Marker 19,843,994 - 19,848,830 (bp) Automated name-based View Maps
TcSNP1007 Marker 90.8 No other positions
gTcCIR157 Marker 20.6 Cocoa - Physical map - Tc09 gTcCIR157 Marker 4,336,452 - 4,336,865 (bp) Automated name-based View Maps
Cocoa - IMC78xCatongo - LG9 gTcCIR157 Marker 12.6 (cM) Automated name-based View Maps
Cocoa - test - LG9 gTcCIR157 Marker 22 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG9 gTcCIR157 Marker 22 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG9 gTcCIR157 Marker 22 (cM) Automated name-based View Maps
TcSNP1340 Marker 13.1 Cocoa - Physical map - Tc09 TcSNP1340 Marker 2,584,935 - 2,585,663 (bp) Automated name-based View Maps
TcSNP563 Marker 69.4 Cocoa - Physical map - Tc09 TcSNP563 Marker 25,019,236 - 25,020,949 (bp) Automated name-based View Maps
TcSNP828 Marker 61.5 Cocoa - Physical map - Tc09 TcSNP828 Marker 22,664,561 - 22,665,284 (bp) Automated name-based View Maps
mTcCIR544 Marker 48.5 Cocoa - Physical map - Tc09 mTcCIR544 Marker 14,682,884 - 14,684,910 (bp) Automated name-based View Maps
mTcCIR96 Marker 78.9 Cocoa - consensus_disease_res - LG9 mTcCIR96 Marker 78.5 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc09 mTcCIR96 Marker 26,896,704 - 26,896,955 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG9 mTcCIR96 Marker 78.5 (cM) Automated name-based View Maps
Cocoa - test - LG9 mTcCIR96 Marker 78.5 (cM) Automated name-based View Maps
TcSNP449 Marker 32.1 Cocoa - Physical map - Tc09 TcSNP449 Marker 6,924,115 - 6,924,782 (bp) Automated name-based View Maps
TcSNP1076 Marker 51.2 Cocoa - Physical map - Tc09 TcSNP1076 Marker 19,401,041 - 19,402,250 (bp) Automated name-based View Maps
TcSNP319 Marker 7.2 Cocoa - Physical map - Tc09 TcSNP319 Marker 1,555,322 - 1,555,908 (bp) Automated name-based View Maps
TcSNP184 Marker 41.9 Cocoa - Physical map - Tc09 TcSNP184 Marker 11,105,577 - 11,106,053 (bp) Automated name-based View Maps