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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Coffee-COFFEE_CoffeaSeqGenomeV1_DH200
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps chr2
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Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
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 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Physical [ View Map Type Info ]
Map Set Name: Coffee - COFFEE_CoffeaSeqGenomeV1_DH200 [ View Map Set Info ]
Map Name: chr2
Map Start: 0 bp
Map Stop: 54,522,928 bp
Features by Type:
33 Marker
33 Total

Map Features

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Items 26 to 33 of 33.       Previous | of 2
Coffee - COFFEE_CoffeaSeqGenomeV1_DH200 - chr2
(Click headers to resort)		 Comparative Maps
Feature Type Position (bp) Map Feature Type Position Evidence Actions
Mg_M388 Marker 17,169,813 - 17,170,142 No other positions
Mg_M398 Marker 17,297,904 - 17,298,133 No other positions
Me_ssr122680 Marker 20,292,192 - 20,292,435 No other positions
Mg_M327 Marker 20,657,168 - 20,657,358 No other positions
Me_ssr122056 Marker 22,421,499 - 22,421,706 No other positions
Mg_ssrR14 Marker 26,481,641 - 26,481,842 No other positions
Mg_M783 Marker 31,251,771 - 31,251,893 No other positions
Me_ssr124612 Marker 48,217,661 - 48,217,798 No other positions