CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-consensus_disease_res
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG6
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:
No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:
No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order
Number of
Correspondences
Ignore Image Map
Sanity Check:
No Yes
(Hide Advanced Menu)


Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - consensus_disease_res [ View Map Set Info ]
Map Name: LG6
Map Start: 0.00 cM
Map Stop: 62.80 cM
Features by Type:
40 Marker
5 QTL
45 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 45.       of 2 | Next
Cocoa - consensus_disease_res - LG6
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
mTcCIR71 Marker 30.10 Cocoa - ref_UPA402xUF676 - LG6 mTcCIR71 Marker 30.10 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG6 mTcCIR71 Marker 33.60 (cM) Automated name-based View Maps
Cocoa - test - LG6 mTcCIR71 Marker 30.10 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc06 mTcCIR71 Marker 10,478,067.00 - 10,478,443.00 (bp) Automated name-based View Maps
Cocoa - TSH516 - LG6 mTcCIR71 Marker 32.80 (cM) Automated name-based View Maps
mTcCIR136 Marker 2.70 Cocoa - SSR_SNP_consensus_map - LG6 mTcCIR136 Marker 7.00 (cM) Automated name-based View Maps
Cocoa - test - LG6 mTcCIR136 Marker 2.70 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG6 mTcCIR136 Marker 1.50 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 mTcCIR136 Marker 2.70 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc06 mTcCIR136 Marker 581,553.00 - 582,101.00 (bp) Automated name-based View Maps
mTcCIR182 Marker 4.10 Cocoa - test - LG6 mTcCIR182 Marker 4.10 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG6 mTcCIR182 Marker 8.30 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 mTcCIR182 Marker 4.10 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc06 mTcCIR182 Marker 1,771,809.00 - 1,772,173.00 (bp) Automated name-based View Maps
mTcCIR185 Marker 12.10 Cocoa - Physical map - Tc06 mTcCIR185 Marker 4,545,070.00 - 4,545,587.00 (bp) Automated name-based View Maps
Cocoa - test - LG6 mTcCIR185 Marker 12.10 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG6 mTcCIR185 Marker 15.40 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 mTcCIR185 Marker 12.10 (cM) Automated name-based View Maps
mTcCIR193 Marker 31.80 Cocoa - SSR_SNP_consensus_map - LG6 mTcCIR193 Marker 34.80 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 mTcCIR193 Marker 31.80 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc06 mTcCIR193 Marker 10,892,555.00 - 10,892,707.00 (bp) Automated name-based View Maps
Cocoa - test - LG6 mTcCIR193 Marker 31.80 (cM) Automated name-based View Maps
mTcCIR208 Marker 8.10 Cocoa - SSR_SNP_consensus_map - LG6 mTcCIR208 Marker 12.20 (cM) Automated name-based View Maps
Cocoa - test - LG6 mTcCIR208 Marker 8.10 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 mTcCIR208 Marker 8.10 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc06 mTcCIR208 Marker 2,954,713.00 - 2,955,854.00 (bp) Automated name-based View Maps
mTcCIR209 Marker 53.90 Cocoa - TSH516 - LG6 mTcCIR209 Marker 55.00 (cM) Automated name-based View Maps
Cocoa - test - LG6 mTcCIR209 Marker 53.90 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG6 mTcCIR209 Marker 55.30 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 mTcCIR209 Marker 53.90 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc06 mTcCIR209 Marker 14,485,223.00 - 14,485,553.00 (bp) Automated name-based View Maps
mTcCIR235 Marker 23.80 Cocoa - ref_UPA402xUF676 - LG6 mTcCIR235 Marker 23.80 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc06 mTcCIR235 Marker 9,697,929.00 - 9,698,349.00 (bp) Automated name-based View Maps
Cocoa - test - LG6 mTcCIR235 Marker 23.80 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG6 mTcCIR235 Marker 29.00 (cM) Automated name-based View Maps
mTcCIR238 Marker 33.10 Cocoa - test - LG6 mTcCIR238 Marker 33.10 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc06 mTcCIR238 Marker 10,996,190.00 - 10,996,360.00 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 mTcCIR238 Marker 33.10 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG6 mTcCIR238 Marker 36.10 (cM) Automated name-based View Maps
mTcCIR255 Marker 39.10 Cocoa - Physical map - Tc06 mTcCIR255 Marker 12,281,625.00 - 12,282,005.00 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 mTcCIR255 Marker 39.10 (cM) Automated name-based View Maps
Cocoa - test - LG6 mTcCIR255 Marker 39.10 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG6 mTcCIR255 Marker 41.70 (cM) Automated name-based View Maps
mTcCIR276 Marker 27.50 Cocoa - SSR_SNP_consensus_map - LG6 mTcCIR276 Marker 31.60 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG6 mTcCIR276 Marker 34.90 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc06 mTcCIR276 Marker 10,258,427.00 - 10,258,641.00 (bp) Automated name-based View Maps
Cocoa - test - LG6 mTcCIR276 Marker 27.50 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 mTcCIR276 Marker 27.50 (cM) Automated name-based View Maps
mTcCIR290 Marker 10.80 Cocoa - ref_UPA402xUF676 - LG6 mTcCIR290 Marker 10.80 (cM) Automated name-based View Maps
Cocoa - test - LG6 mTcCIR290 Marker 10.80 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG6 mTcCIR290 Marker 14.80 (cM) Automated name-based View Maps
mTcCIR291 Marker 62.80 Cocoa - ref_UPA402xUF676 - LG6 mTcCIR291 Marker 62.80 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG6 mTcCIR291 Marker 60.90 (cM) Automated name-based View Maps
Cocoa - test - LG6 mTcCIR291 Marker 62.80 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG6 mTcCIR291 Marker 64.00 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc06 mTcCIR291 Marker 15,327,995.00 - 15,328,478.00 (bp) Automated name-based View Maps
mTcCIR6 Marker 0.00 Cocoa - S52xCatongo - LG6 mTcCIR6 Marker 0.00 (cM) Automated name-based View Maps
Cocoa - DR1xCatongo - LG6 mTcCIR6 Marker 0.00 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG6 mTcCIR6 Marker 0.00 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 mTcCIR6 Marker 0.00 (cM) Automated name-based View Maps
Cocoa - test - LG6 mTcCIR6 Marker 0.00 (cM) Automated name-based View Maps
Cocoa - IMC78xCatongo - LG6 mTcCIR6 Marker 74.10 (cM) Automated name-based View Maps
mTcCIR9 Marker 59.10 Cocoa - IMC78xCatongo - LG6 mTcCIR9 Marker 128.70 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 mTcCIR9 Marker 59.10 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG6 mTcCIR9 Marker 58.50 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG6 mTcCIR9 Marker 60.20 (cM) Automated name-based View Maps
Cocoa - (Sca6xH)xC1 - LG6 mTcCIR9 Marker 67.80 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc06 mTcCIR9 Marker 15,005,639.00 - 15,005,955.00 (bp) Automated name-based View Maps
Cocoa - test - LG6 mTcCIR9 Marker 59.10 (cM) Automated name-based View Maps
mTcCIR16 Marker 4.60 Cocoa - test - LG6 mTcCIR16 Marker 4.60 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 mTcCIR16 Marker 4.60 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG6 mTcCIR16 Marker 8.60 (cM) Automated name-based View Maps
mTcCIR25 Marker 34.40 Cocoa - TSH516 - LG6 mTcCIR25 Marker 38.00 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG6 mTcCIR25 Marker 37.50 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 mTcCIR25 Marker 34.40 (cM) Automated name-based View Maps
Cocoa - test - LG6 mTcCIR25 Marker 34.40 (cM) Automated name-based View Maps
mTcCIR28 Marker 49.30 Cocoa - (Sca6xH)xC1 - LG6 mTcCIR28 Marker 55.30 (cM) Automated name-based View Maps
Cocoa - test - LG6 mTcCIR28 Marker 49.30 (cM) Automated name-based View Maps
mTcCIR52 Marker 55.00 Cocoa - test - LG6 mTcCIR52 Marker 55.00 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 mTcCIR52 Marker 55.00 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG6 mTcCIR52 Marker 56.20 (cM) Automated name-based View Maps
Cocoa - (Sca6xH)xC1 - LG6 mTcCIR52 Marker 65.20 (cM) Automated name-based View Maps
mTcCIR50 Marker 15.50 Cocoa - test - LG6 mTcCIR50 Marker 15.50 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc09 mTcCIR50 Marker 9,271,950.00 - 9,272,283.00 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 mTcCIR50 Marker 15.50 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG6 mTcCIR50 Marker 19.40 (cM) Automated name-based View Maps
cTcCIR12 Marker 31.70 Cocoa - ref_UPA402xUF676 - LG6 cTcCIR12 Marker 31.70 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG6 cTcCIR12 Marker 34.40 (cM) Automated name-based View Maps
Cocoa - test - LG6 cTcCIR12 Marker 31.70 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc06 cTcCIR12 Marker 10,841,906.00 - 10,842,082.00 (bp) Automated name-based View Maps
gTcCIR160 Marker 13.10 Cocoa - test - LG6 gTcCIR160 Marker 13.10 (cM) Automated name-based View Maps
Cocoa - IMC78xCatongo - LG6 gTcCIR160 Marker 84.50 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 gTcCIR160 Marker 13.10 (cM) Automated name-based View Maps
gTcCIR139b Marker 62.60 Cocoa - ref_UPA402xUF676 - LG6 gTcCIR139b Marker 62.60 (cM) Automated name-based View Maps
Cocoa - test - LG6 gTcCIR139b Marker 62.60 (cM) Automated name-based View Maps
cTcCIR247 Marker 2.40 Cocoa - test - LG6 cTcCIR247 Marker 2.40 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 cTcCIR247 Marker 2.40 (cM) Automated name-based View Maps
cTcCIR245 Marker 17.70 Cocoa - test - LG6 cTcCIR245 Marker 17.70 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 cTcCIR245 Marker 17.70 (cM) Automated name-based View Maps