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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Cocoa-test
(Reference Set)
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Correspondences
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Maps LG3
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - Test [ View Map Set Info ]
Map Name: LG3
Map Start: 0 cM
Map Stop: 88.5 cM
Features by Type:
71 Marker
71 Total

Map Features

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Items 51 to 71 of 71.       Previous | of 3
Cocoa - Test - LG3
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
C41 Marker 71.7 Cocoa - consensus_disease_res - LG3 C41 Marker 71.7 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG3 C41 Marker 67.1 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc03 C41 Marker 24,477,382 - 24,477,494 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG3 C41 Marker 71.7 (cM) Automated name-based View Maps
C42 Marker 45.6 Cocoa - ref_UPA402xUF676 - LG3 C42 Marker 45.6 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG3 C42 Marker 45.6 (cM) Automated name-based View Maps
C65 Marker 24 Cocoa - consensus_disease_res - LG3 C65 Marker 24 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG3 C65 Marker 24 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG3 C65 Marker 24.1 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc03 C65 Marker 14,223,598 - 14,223,777 (bp) Automated name-based View Maps
CA39 Marker 11.9 Cocoa - consensus_disease_res - LG3 CA39 Marker 11.9 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG3 CA39 Marker 11.9 (cM) Automated name-based View Maps
cot3089 Marker 15.2 Cocoa - consensus_disease_res - LG3 cot3089 Marker 15.2 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG3 cot3089 Marker 15.2 (cM) Automated name-based View Maps
gTcCIR121a Marker 13.8 Cocoa - ref_UPA402xUF676 - LG3 gTcCIR121a Marker 13.8 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG3 gTcCIR121a Marker 13.8 (cM) Automated name-based View Maps
mTcCIR62 Marker 16.7 Cocoa - consensus_disease_res - LG3 mTcCIR62 Marker 16.7 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG3 mTcCIR62 Marker 68 (cM) Automated name-based View Maps
Cocoa - (Sca6xH)xC1 - LG3 mTcCIR62 Marker 12.6 (cM) Automated name-based View Maps
AN11B Marker 0 Cocoa - consensus_disease_res - LG3 AN11B Marker 0 (cM) Automated name-based View Maps
CSPH3 Marker 5.8 Cocoa - consensus_disease_res - LG3 CSPH3 Marker 5.8 (cM) Automated name-based View Maps
015f Marker 7 Cocoa - consensus_disease_res - LG3 015f Marker 7 (cM) Automated name-based View Maps
CCG1149 Marker 7 Cocoa - consensus_disease_res - LG3 CCG1149 Marker 7 (cM) Automated name-based View Maps
RAF10/14 Marker 23.9 Cocoa - consensus_disease_res - LG3 RAF10/14 Marker 23.9 (cM) Automated name-based View Maps
CCG1153 Marker 31.6 Cocoa - consensus_disease_res - LG3 CCG1153 Marker 31.6 (cM) Automated name-based View Maps
CCG1909 Marker 38 Cocoa - consensus_disease_res - LG3 CCG1909 Marker 38 (cM) Automated name-based View Maps
CCG1169 Marker 40.6 Cocoa - consensus_disease_res - LG3 CCG1169 Marker 40.6 (cM) Automated name-based View Maps
CCG1696 Marker 61.3 Cocoa - consensus_disease_res - LG3 CCG1696 Marker 61.3 (cM) Automated name-based View Maps
CCG2295 Marker 62.4 Cocoa - consensus_disease_res - LG3 CCG2295 Marker 62.4 (cM) Automated name-based View Maps
CIAF55/13 Marker 63.2 Cocoa - consensus_disease_res - LG3 CIAF55/13 Marker 63.2 (cM) Automated name-based View Maps
RAF6/1 Marker 69.2 Cocoa - consensus_disease_res - LG3 RAF6/1 Marker 69.2 (cM) Automated name-based View Maps
CCG1217 Marker 72.2 Cocoa - consensus_disease_res - LG3 CCG1217 Marker 72.2 (cM) Automated name-based View Maps
CCC3 Marker 76.9 Cocoa - consensus_disease_res - LG3 CCC3 Marker 76.9 (cM) Automated name-based View Maps