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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set Cocoa-ref_UPA402xUF676
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Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
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Show Labels: None Landmarks All
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Features:		 No Yes
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Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
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Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
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Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - ref_UPA402xUF676 [ View Map Set Info ]
Map Name: LG4
Map Start: 0 cM
Map Stop: 75.3 cM
Features by Type:
55 Marker
2 QTL
57 Total

Map Features

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Items 1 to 25 of 57.       of 3 | Next
Cocoa - ref_UPA402xUF676 - LG4
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
cTcCIR224 Marker 30.2 Cocoa - consensus_disease_res - LG4 cTcCIR224 Marker 30.2 (cM) Automated name-based View Maps
Cocoa - test - LG4 cTcCIR224 Marker 30.2 (cM) Automated name-based View Maps
N1388 Marker 34.5 No other positions
cTcCIR243 Marker 43.6 Cocoa - test - LG4 cTcCIR243 Marker 43.6 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 cTcCIR243 Marker 43.6 (cM) Automated name-based View Maps
gTcCIR136 Marker 43.1 Cocoa - consensus_disease_res - LG4 gTcCIR136 Marker 43.1 (cM) Automated name-based View Maps
Cocoa - S52xCatongo - LG4 gTcCIR136 Marker 53 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG4 gTcCIR136 Marker 36.2 (cM) Automated name-based View Maps
Cocoa - DR1xCatongo - LG4 gTcCIR136 Marker 50.8 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc04 gTcCIR136 Marker 17,484,278 - 17,484,823 (bp) Automated name-based View Maps
Cocoa - test - LG4 gTcCIR136 Marker 43.1 (cM) Automated name-based View Maps
Cocoa - IMC78xCatongo - LG4 gTcCIR136 Marker 44.1 (cM) Automated name-based View Maps
cTcCIR212 Marker 49.6 Cocoa - IMC78xCatongo - LG4 cTcCIR212 Marker 58.3 (cM) Automated name-based View Maps
Cocoa - test - LG4 cTcCIR212 Marker 49.6 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 cTcCIR212 Marker 49.6 (cM) Automated name-based View Maps
cTcCIR251 Marker 67.8 Cocoa - consensus_disease_res - LG4 cTcCIR251 Marker 67.8 (cM) Automated name-based View Maps
Cocoa - test - LG4 cTcCIR251 Marker 67.8 (cM) Automated name-based View Maps
cTcCIR205 Marker 75.3 Cocoa - test - LG4 cTcCIR205 Marker 75.3 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 cTcCIR205 Marker 75.3 (cM) Automated name-based View Maps
C104 Marker 3.4 Cocoa - consensus_disease_res - LG4 C104 Marker 3.4 (cM) Automated name-based View Maps
Cocoa - (Sca6xH)xC1 - LG4 C104 Marker 0 (cM) Automated name-based View Maps
Cocoa - test - LG4 C104 Marker 3.4 (cM) Automated name-based View Maps
C3 Marker 66.8 Cocoa - (Sca6xH)xC1 - LG4 C3 Marker 62.8 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 C3 Marker 66.8 (cM) Automated name-based View Maps
Cocoa - test - LG4 C3 Marker 66.8 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG4 C3 Marker 60 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc04 C3 Marker 22,465,078 - 22,465,216 (bp) Automated name-based View Maps
PT172/A1 Marker 21.9 Cocoa - test - LG4 PT172/A1 Marker 21.9 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG4 PT172/A1 Marker 21 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc04 PT172/A1 Marker 10,498,354 - 10,499,030 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 PT172/A1 Marker 21.9 (cM) Automated name-based View Maps
PT172/B9 Marker 26 Cocoa - SSR_SNP_consensus_map - LG4 PT172/B9 Marker 23.8 (cM) Automated name-based View Maps
Cocoa - test - LG4 PT172/B9 Marker 26 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc04 PT172/B9 Marker 13,265,151 - 13,266,544 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 PT172/B9 Marker 26 (cM) Automated name-based View Maps
PTSCA6/A1 Marker 22.1 Cocoa - SSR_SNP_consensus_map - LG4 PTSCA6/A1 Marker 21.5 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc04 PTSCA6/A1 Marker 10,914,479 - 10,914,967 (bp) Automated name-based View Maps
Cocoa - test - LG4 PTSCA6/A1 Marker 22.1 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 PTSCA6/A1 Marker 22.1 (cM) Automated name-based View Maps
PTSCA6/A3 Marker 23.1 Cocoa - consensus_disease_res - LG4 PTSCA6/A3 Marker 23.1 (cM) Automated name-based View Maps
Cocoa - test - LG4 PTSCA6/A3 Marker 23.1 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG4 PTSCA6/A3 Marker 21.7 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc04 PTSCA6/A3 Marker 11,485,686 - 11,486,222 (bp) Automated name-based View Maps
PTSCA6/B2 Marker 23.1 Cocoa - test - LG4 PTSCA6/B2 Marker 23.1 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc09 PTSCA6/B2 Marker 26,770,285 - 26,770,821 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG4 PTSCA6/B2 Marker 22.4 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 PTSCA6/B2 Marker 23.1 (cM) Automated name-based View Maps
TEL139/HIND Marker 1.7 Cocoa - test - LG4 TEL139/HIND Marker 1.7 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 TEL139/HIND Marker 1.7 (cM) Automated name-based View Maps
IDH Marker 0 Cocoa - consensus_disease_res - LG4 IDH Marker 0 (cM) Automated name-based View Maps
Cocoa - test - LG4 IDH Marker 0 (cM) Automated name-based View Maps
MDH/A Marker 53.6 Cocoa - consensus_disease_res - LG4 MDH/A Marker 53.6 (cM) Automated name-based View Maps
Cocoa - test - LG4 MDH/A Marker 53.6 (cM) Automated name-based View Maps
mTcCIR67 Marker 62.3 Cocoa - Physical map - Tc04 mTcCIR67 Marker 21,640,428 - 21,640,833 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR67 Marker 62.3 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG4 mTcCIR67 Marker 55.7 (cM) Automated name-based View Maps
Cocoa - test - LG4 mTcCIR67 Marker 62.3 (cM) Automated name-based View Maps
mTcCIR76 Marker 2.6 Cocoa - test - LG4 mTcCIR76 Marker 2.6 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR76 Marker 2.6 (cM) Automated name-based View Maps
mTcCIR95 Marker 48 Cocoa - TSH516 - LG4 mTcCIR95 Marker 19.5 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG4 mTcCIR95 Marker 43.2 (cM) Automated name-based View Maps
Cocoa - test - LG4 mTcCIR95 Marker 48 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR95 Marker 48 (cM) Automated name-based View Maps
mTcCIR107 Marker 19.4 Cocoa - Physical map - Tc04 mTcCIR107 Marker 9,377,259 - 9,377,583 (bp) Automated name-based View Maps
Cocoa - test - LG4 mTcCIR107 Marker 19.4 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR107 Marker 19.4 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG4 mTcCIR107 Marker 18.7 (cM) Automated name-based View Maps
mTcCIR115 Marker 8.5 Cocoa - SSR_SNP_consensus_map - LG4 mTcCIR115 Marker 6.7 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR115 Marker 8.5 (cM) Automated name-based View Maps
Cocoa - test - LG4 mTcCIR115 Marker 8.5 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc04 mTcCIR115 Marker 1,255,075 - 1,255,353 (bp) Automated name-based View Maps
mTcCIR117 Marker 57.7 Cocoa - TSH516 - LG4 mTcCIR117 Marker 9.9 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc04 mTcCIR117 Marker 20,971,038 - 20,971,337 (bp) Automated name-based View Maps
Cocoa - test - LG4 mTcCIR117 Marker 57.7 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG4 mTcCIR117 Marker 51.6 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR117 Marker 57.7 (cM) Automated name-based View Maps
mTcCIR158 Marker 7.9 Cocoa - test - LG4 mTcCIR158 Marker 7.9 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG4 mTcCIR158 Marker 6.1 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc04 mTcCIR158 Marker 1,611,146 - 1,611,576 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG4 mTcCIR158 Marker 7.9 (cM) Automated name-based View Maps
mTcCIR168 Marker 2.3 Cocoa - consensus_disease_res - LG4 mTcCIR168 Marker 2.3 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc04 mTcCIR168 Marker 139,573 - 140,047 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG4 mTcCIR168 Marker 0.7 (cM) Automated name-based View Maps
Cocoa - test - LG4 mTcCIR168 Marker 2.3 (cM) Automated name-based View Maps