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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Cocoa-ref_UPA402xUF676
(Reference Set)
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Maps LG9
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
QTL
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - ref_UPA402xUF676 [ View Map Set Info ]
Map Name: LG9
Map Start: 0 cM
Map Stop: 98.8 cM
Features by Type:
57 Marker
6 QTL
63 Total

Map Features

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Items 51 to 63 of 63.       Previous | of 3
Cocoa - ref_UPA402xUF676 - LG9
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
cTcCIR45 Marker 17.6 Cocoa - test - LG9 cTcCIR45 Marker 17.6 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG9 cTcCIR45 Marker 17.6 (cM) Automated name-based View Maps
gTcCIR109 Marker 9 Cocoa - test - LG9 gTcCIR109 Marker 9 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG9 gTcCIR109 Marker 5.5 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc09 gTcCIR109 Marker 1,089,593 - 1,089,854 (bp) Automated name-based View Maps
Cocoa - DR1xCatongo - LG9 gTcCIR109 Marker 0 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG9 gTcCIR109 Marker 9 (cM) Automated name-based View Maps
cTcCIR206 Marker 4.2 Cocoa - consensus_disease_res - LG9 cTcCIR206 Marker 4.2 (cM) Automated name-based View Maps
Cocoa - test - LG9 cTcCIR206 Marker 4.2 (cM) Automated name-based View Maps
gTcCIR117 Marker 4.2 Cocoa - test - LG9 gTcCIR117 Marker 4.2 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG9 gTcCIR117 Marker 4.2 (cM) Automated name-based View Maps
C106 Marker 86.1 Cocoa - consensus_disease_res - LG9 C106 Marker 86.1 (cM) Automated name-based View Maps
Cocoa - test - LG9 C106 Marker 86.1 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc09 C106 Marker 27,099,446 - 27,099,652 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG9 C106 Marker 85.2 (cM) Automated name-based View Maps
PR2/19 Marker 55.1 Cocoa - consensus_disease_res - LG9 PR2/19 Marker 55.1 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc09 PR2/19 Marker 20,183,717 - 20,184,433 (bp) Automated name-based View Maps
Cocoa - test - LG9 PR2/19 Marker 55.1 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG9 PR2/19 Marker 54 (cM) Automated name-based View Maps
PTSCA6/A2 Marker 80.8 Cocoa - consensus_disease_res - LG9 PTSCA6/A2 Marker 80.8 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG9 PTSCA6/A2 Marker 80.9 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc04 PTSCA6/A2 Marker 11,819,853 - 11,820,772 (bp) Automated name-based View Maps
Cocoa - test - LG9 PTSCA6/A2 Marker 80.8 (cM) Automated name-based View Maps
ref_FAT/NIRS_lg9 QTL 37.2 No other positions
ref_FAT/MSa_lg9 QTL 37.3 No other positions
ref_FAT/MSb_lg9 QTL 64.1 No other positions
ref_DBW_lg9 QTL 58 No other positions
ref_AST_lg9 QTL 27.8 No other positions
ref_FLO5_lg9 QTL 27.8 No other positions