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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Cocoa-TSH516
(Reference Set)
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Maps LG1
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence
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Features:
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score
Greater Than
Score
Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
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Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
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Same Scale:
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - TSH516 [ View Map Set Info ]
Map Name: LG1
Map Start: 0.00 cM
Map Stop: 52.60 cM
Features by Type:
15 Marker
1 QTL
16 Total

Map Features

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Items 1 to 16 of 16.
Cocoa - TSH516 - LG1
(Click headers to resort)
Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
RGH11 Marker 52.60 Cocoa - test - LG1 RGH11 Marker 95.40 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 RGH11 Marker 95.40 (cM) Automated name-based View Maps
SHRSTc34 Marker 24.70 No other positions
SHRSTc23 Marker 16.30 No other positions
SHRSTc3 Marker 9.80 No other positions
W1214 Marker 0.00 Cocoa - test - LG1 W1214 Marker 42.90 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 W1214 Marker 42.90 (cM) Automated name-based View Maps
mTcCIR29 Marker 1.70 Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR29 Marker 40.90 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR29 Marker 12,404,557.00 - 12,404,940.00 (bp) Automated name-based View Maps
Cocoa - (Sca6xH)xC1 - LG1 mTcCIR29 Marker 46.10 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR29 Marker 44.60 (cM) Automated name-based View Maps
Cocoa - test - LG1 mTcCIR29 Marker 44.60 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR29 Marker 44.60 (cM) Automated name-based View Maps
mTcCIR22 Marker 49.10 No other positions
mTcCIR286 Marker 24.00 Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR286 Marker 65.20 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR286 Marker 68.30 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR286 Marker 68.30 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR286 Marker 25,295,692.00 - 25,296,005.00 (bp) Automated name-based View Maps
Cocoa - test - LG1 mTcCIR286 Marker 68.30 (cM) Automated name-based View Maps
mTcCIR246 Marker 17.90 Cocoa - ref_UPA402xUF676 - LG1 mTcCIR246 Marker 60.50 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR246 Marker 23,367,998.00 - 23,368,193.00 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR246 Marker 57.40 (cM) Automated name-based View Maps
Cocoa - test - LG1 mTcCIR246 Marker 60.50 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR246 Marker 60.50 (cM) Automated name-based View Maps
mTcCIR249 Marker 8.50 Cocoa - test - LG1 mTcCIR249 Marker 49.10 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR249 Marker 49.10 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR249 Marker 49.10 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR249 Marker 46.00 (cM) Automated name-based View Maps
mTcCIR264 Marker 45.90 Cocoa - test - LG1 mTcCIR264 Marker 89.00 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR264 Marker 29,843,054.00 - 29,843,553.00 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR264 Marker 84.10 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR264 Marker 89.00 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR264 Marker 89.00 (cM) Automated name-based View Maps
mTcCIR273 Marker 21.40 Cocoa - consensus_disease_res - LG1 mTcCIR273 Marker 65.30 (cM) Automated name-based View Maps
Cocoa - test - LG1 mTcCIR273 Marker 65.30 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR273 Marker 24,716,634.00 - 24,716,895.00 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR273 Marker 62.90 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR273 Marker 65.30 (cM) Automated name-based View Maps
mTcCIR275 Marker 43.60 Cocoa - ref_UPA402xUF676 - LG1 mTcCIR275 Marker 85.20 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR275 Marker 81.40 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR275 Marker 29,344,219.00 - 29,344,754.00 (bp) Automated name-based View Maps
Cocoa - test - LG1 mTcCIR275 Marker 85.20 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR275 Marker 85.20 (cM) Automated name-based View Maps
mTcCIR244 Marker 15.70 Cocoa - consensus_disease_res - LG1 mTcCIR244 Marker 58.50 (cM) Automated name-based View Maps
Cocoa - test - LG1 mTcCIR244 Marker 58.50 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR244 Marker 58.50 (cM) Automated name-based View Maps
mTcCIR194 Marker 52.60 Cocoa - test - LG1 mTcCIR194 Marker 95.40 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc01 mTcCIR194 Marker 30,900,743.00 - 30,901,001.00 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG1 mTcCIR194 Marker 90.90 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG1 mTcCIR194 Marker 95.40 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG1 mTcCIR194 Marker 95.40 (cM) Automated name-based View Maps
TSH516_TDb_lg9 QTL 45.40 No other positions