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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set Cocoa-TSH516
(Reference Set)
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Maps LG5
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
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Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - TSH516 [ View Map Set Info ]
Map Name: LG5
Map Start: 0 cM
Map Stop: 86.6 cM
Features by Type:
27 Marker
27 Total

Map Features

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Items 1 to 25 of 27.       of 2 | Next
Cocoa - TSH516 - LG5
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
SHRSTc4 Marker 64.7 No other positions
W1211 Marker 50 Cocoa - consensus_disease_res - LG5 W1211 Marker 42.1 (cM) Automated name-based View Maps
Cocoa - test - LG5 W1211 Marker 42.1 (cM) Automated name-based View Maps
SHRSTc19 Marker 48.6 No other positions
mTcCIR149 Marker 40.4 No other positions
mTcCIR196 Marker 26.8 No other positions
SHRSTc22 Marker 18.6 No other positions
SHRSTc11 Marker 8 No other positions
mTcSHRSTc12 Marker 7.8 No other positions
mTcSHRSTc37 Marker 5.6 No other positions
mTcCIR111 Marker 0.3 No other positions
W1210 Marker 0 Cocoa - test - LG5 W1210 Marker 0 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 W1210 Marker 0 (cM) Automated name-based View Maps
mTcCIR42 Marker 27.8 Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR42 Marker 27.8 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR42 Marker 28.9 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR42 Marker 28.9 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 mTcCIR42 Marker 28.9 (cM) Automated name-based View Maps
Cocoa - (Sca6xH)xC1 - LG5 mTcCIR42 Marker 25.1 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR42 Marker 11,919,975 - 11,920,770 (bp) Automated name-based View Maps
mTcCIR10 Marker 21.9 Cocoa - test - LG5 mTcCIR10 Marker 24.4 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR10 Marker 24.4 (cM) Automated name-based View Maps
Cocoa - S52xCatongo - LG5A mTcCIR10 Marker 29.5 (cM) Automated name-based View Maps
Cocoa - (Sca6xH)xC1 - LG5 mTcCIR10 Marker 24.6 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR10 Marker 24.5 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 mTcCIR10 Marker 24.4 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR10 Marker 5,936,099 - 5,936,310 (bp) Automated name-based View Maps
mTcCIR123 Marker 26.8 Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR123 Marker 27.2 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR123 Marker 10,338,759 - 10,339,187 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR123 Marker 28.5 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR123 Marker 28.5 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 mTcCIR123 Marker 28.5 (cM) Automated name-based View Maps
mTcCIR274 Marker 86.6 Cocoa - Physical map - Tc05 mTcCIR274 Marker 25,436,644 - 25,436,911 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR274 Marker 73.3 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR274 Marker 78.1 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 mTcCIR274 Marker 73.3 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR274 Marker 73.3 (cM) Automated name-based View Maps
mTcCIR256 Marker 40.4 Cocoa - consensus_disease_res - LG5 mTcCIR256 Marker 35.9 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR256 Marker 35.9 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR256 Marker 16,983,793 - 16,984,161 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR256 Marker 35.9 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR256 Marker 34.6 (cM) Automated name-based View Maps
mTcCIR245 Marker 49.7 Cocoa - Physical map - Tc05 mTcCIR245 Marker 17,411,650 - 17,412,019 (bp) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR245 Marker 41.5 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR245 Marker 40 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 mTcCIR245 Marker 41.5 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR245 Marker 41.5 (cM) Automated name-based View Maps
mTcCIR232 Marker 1.3 Cocoa - consensus_disease_res - LG5 mTcCIR232 Marker 0.8 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR232 Marker 0.8 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR232 Marker 1 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR232 Marker 0.8 (cM) Automated name-based View Maps
mTcCIR170 Marker 41.4 Cocoa - Physical map - Tc05 mTcCIR170 Marker 17,302,875 - 17,303,192 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR170 Marker 37.9 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR170 Marker 36.3 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR170 Marker 37.9 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 mTcCIR170 Marker 37.9 (cM) Automated name-based View Maps
mTcCIR169 Marker 31.9 Cocoa - test - LG5 mTcCIR169 Marker 30.9 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 mTcCIR169 Marker 30.9 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR169 Marker 29.8 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR169 Marker 30.9 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR169 Marker 13,665,187 - 13,665,487 (bp) Automated name-based View Maps
mTcCIR148 Marker 13.9 Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR148 Marker 16.1 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR148 Marker 16.7 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR148 Marker 16.7 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 mTcCIR148 Marker 16.7 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR148 Marker 3,359,278 - 3,359,781 (bp) Automated name-based View Maps
mTcCIR119 Marker 2.5 Cocoa - ref_UPA402xUF676 - LG5 mTcCIR119 Marker 8 (cM) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR119 Marker 7.2 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 mTcCIR119 Marker 8 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR119 Marker 8 (cM) Automated name-based View Maps
mTcCIR109 Marker 86.2 Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR109 Marker 76.6 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR109 Marker 25,324,140 - 25,324,751 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR109 Marker 72 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR109 Marker 72 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 mTcCIR109 Marker 72 (cM) Automated name-based View Maps
mTcCIR101 Marker 86.2 Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR101 Marker 75.6 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR101 Marker 70.7 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR101 Marker 70.7 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 mTcCIR101 Marker 70.7 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc05 mTcCIR101 Marker 25,252,837 - 25,253,480 (bp) Automated name-based View Maps
mTcCIR87 Marker 68.9 Cocoa - Physical map - Tc05 mTcCIR87 Marker 21,545,319 - 21,546,444 (bp) Automated name-based View Maps
Cocoa - SSR_SNP_consensus_map - LG5 mTcCIR87 Marker 57.8 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG5 mTcCIR87 Marker 54.4 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG5 mTcCIR87 Marker 54.4 (cM) Automated name-based View Maps
Cocoa - test - LG5 mTcCIR87 Marker 54.4 (cM) Automated name-based View Maps