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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Cotton-E3
(Reference Set)
Min.
Correspondences
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Maps 15
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 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - E3 [ View Map Set Info ]
Map Name: 15
Map Start: 0 cM
Map Stop: 179 cM
Features by Type:
105 Marker
105 Total

Map Features

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Items 1 to 25 of 105.       of 5 | Next
Cotton - E3 - 15
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
MUSS128 Marker 109.3 Cotton - HDC - 1 CLU512 Marker 100.6 (cM) Automated name-based View Maps
Cotton - HDC - 15 CLU512 Marker 106.1 (cM) Automated name-based View Maps
Cotton - T3 - 1 MUSS128 Marker 28.12 (cM) Automated name-based View Maps
BNL1667 Marker 109.6 Cotton - CH - 15 BNL1667 Marker 122.4 (cM) Automated name-based View Maps
Cotton - PK - c2 BNL1667 Marker 87.7 (cM) Automated name-based View Maps
Cotton - HDC - 2 CLU14 Marker 64.4 (cM) Automated name-based View Maps
Cotton - CH - 1 BNL1667 Marker 97.4 (cM) Automated name-based View Maps
Cotton - T3 - 1 BNL1667 Marker 34.76 (cM) Automated name-based View Maps
Cotton - TH - 15 BNL1667 Marker 48.8 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - c15 BNL1667 Marker 88.5 (cM) Automated name-based View Maps
Cotton - HDC - 17 CLU14 Marker 74.4 (cM) Automated name-based View Maps
Cotton - HDC - 14 CLU14 Marker 75.5 (cM) Automated name-based View Maps
Cotton - PK - c2 BNL1667 Marker 85.9 (cM) Automated name-based View Maps
Cotton - PK - c14 BNL1667 Marker 73.4 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c15 BNL1667 Marker 137.6 (cM) Automated name-based View Maps
Cotton - T3 - 15 BNL1667 Marker 41.51 (cM) Automated name-based View Maps
Cotton - HDC - 1 CLU14 Marker 94.9 (cM) Automated name-based View Maps
Cotton - HDC - 15 CLU14 Marker 106.1 (cM) Automated name-based View Maps
Cotton - GVc - 15 BNL1667 Marker 97.4 (cM) Automated name-based View Maps
Cotton - HDC - 22 CLU14 Marker 55.2 (cM) Automated name-based View Maps
HAU3297 Marker 109.9 Cotton - HDC - 15 CLU512 Marker 106.1 (cM) Automated name-based View Maps
Cotton - HDC - 1 CLU512 Marker 100.6 (cM) Automated name-based View Maps
HAU0294 Marker 110.7 Cotton - HDC - 1 CLU512 Marker 100.6 (cM) Automated name-based View Maps
Cotton - HDC - 15 CLU512 Marker 106.1 (cM) Automated name-based View Maps
NAU3056 Marker 112.2 Cotton - Graimondii_physical - Gr_Chr02 NAU3056 Marker Cotton 9,073,922 - 9,074,539 (bp) Automated name-based View Maps
Cotton - HDC - 15 NAU3056 Marker 106.6 (cM) Automated name-based View Maps
Cotton - TH - 15 NAU3056 Marker 48.4 (cM) Automated name-based View Maps
NAU3057 Marker 112.2 Cotton - HDC - 15 NAU3057 Marker 106.6 (cM) Automated name-based View Maps
HAU2425 Marker 114.4 Cotton - HDC - 15 CLU1534 Marker 111 (cM) Automated name-based View Maps
Cotton - HDC - 1 CLU1534 Marker 93.1 (cM) Automated name-based View Maps
NAU5107 Marker 118 Cotton - HDC - 15 CLU1534 Marker 111 (cM) Automated name-based View Maps
Cotton - TH - 1 NAU5107 Marker 54 (cM) Automated name-based View Maps
Cotton - HDC - 1 CLU1534 Marker 93.1 (cM) Automated name-based View Maps
NAU3714 Marker 120.8 Cotton - TH - 15 NAU3714 Marker 38.7 (cM) Automated name-based View Maps
Cotton - HDC - 15 CLU1023 Marker 117.7 (cM) Automated name-based View Maps
HAU1354 Marker 121 Cotton - HDC - 15 CLU1023 Marker 117.7 (cM) Automated name-based View Maps
Gh565 Marker 0 Cotton - Graimondii_physical - Gr_Chr02 Gh565 Marker Cotton 61,032,044 - 61,032,580 (bp) Automated name-based View Maps
Cotton - T3 - 15 Gh565 Marker 104.69 (cM) Automated name-based View Maps
Cotton - HDC - 15 Gh565 Marker 39.7 (cM) Automated name-based View Maps
NAU5100 Marker 123.8 Cotton - TH - 15 NAU5100 Marker 39.1 (cM) Automated name-based View Maps
Cotton - E3 - 1 NAU5100 Marker 63 (cM) Automated name-based View Maps
Cotton - HDC - 15 CLU2959 Marker 117.2 (cM) Automated name-based View Maps
Cotton - TH - 1 NAU5100 Marker 51.1 (cM) Automated name-based View Maps
Cotton - HDC - 1 CLU2959 Marker 94.7 (cM) Automated name-based View Maps
NAU2936 Marker 8.4 Cotton - HDC - 15 CLU2788 Marker 29.4 (cM) Automated name-based View Maps
HAU0940 Marker 129 Cotton - Graimondii_physical - Gr_Chr02 HAU0940 Marker Cotton 7,344,238 - 7,345,938 (bp) Automated name-based View Maps
Cotton - E3 - 1 HAU0940 Marker 58.7 (cM) Automated name-based View Maps
Cotton - E3 - 1 HAU0940 Marker 57.2 (cM) Automated name-based View Maps
Cotton - HDC - 15 HAU0940 Marker 119.4 (cM) Automated name-based View Maps
MUSS563 Marker 11.5 Cotton - HDC - 15 CLU2788 Marker 29.4 (cM) Automated name-based View Maps
HAU1740 Marker 130.7 Cotton - HDC - 15 CLU486 Marker 120.7 (cM) Automated name-based View Maps
HAU0059 Marker 14.4 Cotton - Graimondii_physical - Gr_Chr02 HAU0059 Marker Cotton 61,962,137 - 61,962,702 (bp) Automated name-based View Maps
Cotton - HDC - 15 HAU0059 Marker 30.9 (cM) Automated name-based View Maps
Cotton - HDC - 15 CLU526 Marker 29.1 (cM) Automated name-based View Maps
Cotton - HDC - 15 CLU629 Marker 28.2 (cM) Automated name-based View Maps
HAU1001 Marker 135.3 Cotton - Graimondii_physical - Gr_Chr02 HAU1001 Marker Cotton 7,426,713 - 7,427,475 (bp) Automated name-based View Maps
Cotton - HDC - 15 HAU1001 Marker 124.3 (cM) Automated name-based View Maps
MUCS141 Marker 14.4 Cotton - HDC - 15 CLU2788 Marker 29.4 (cM) Automated name-based View Maps
Cotton - T3 - 15 MUCS141 Marker 111.78 (cM) Automated name-based View Maps
Cotton - CH - 15 MUCS141 Marker 0 (cM) Automated name-based View Maps
NAU3346 Marker 136.5 Cotton - HDC - 15 CLU868 Marker 136.4 (cM) Automated name-based View Maps
Cotton - TH - 15 NAU3346 Marker 10.2 (cM) Automated name-based View Maps
Cotton - HDC - 15 CLU868 Marker 150.2 (cM) Automated name-based View Maps
MUCS410 Marker 14.4 Cotton - HDC - 15 CLU2788 Marker 29.4 (cM) Automated name-based View Maps
Cotton - T3 - 15 MUCS410 Marker 111.96 (cM) Automated name-based View Maps
NAU4073 Marker 137 Cotton - Graimondii_physical - Gr_Chr02 NAU4073 Marker Cotton 8,676,163 - 8,676,803 (bp) Automated name-based View Maps
Cotton - HDC - 1 NAU4073 Marker 93.4 (cM) Automated name-based View Maps
Cotton - TH - 15 NAU4073 Marker 46 (cM) Automated name-based View Maps
Cotton - E3 - 1 NAU4073 Marker 58.7 (cM) Automated name-based View Maps
Cotton - HDC - 15 NAU4073 Marker 109.3 (cM) Automated name-based View Maps
Cotton - TH - 1 NAU4073 Marker 53.4 (cM) Automated name-based View Maps
MUSS537 Marker 14.4 Cotton - HDC - 15 CLU2984 Marker 30.9 (cM) Automated name-based View Maps
NAU4045 Marker 142.1 Cotton - HDC - 1 CLU1349 Marker 115.1 (cM) Automated name-based View Maps
Cotton - HDC - 8 CLU1349 Marker 94 (cM) Automated name-based View Maps
Cotton - HDC - 15 CLU1349 Marker 129.5 (cM) Automated name-based View Maps
Cotton - E3 - 1 NAU4045 Marker 79.3 (cM) Automated name-based View Maps
Cotton - TH - 1 NAU4045 Marker 28.2 (cM) Automated name-based View Maps
Cotton - TH - 8 NAU4045 Marker 71.1 (cM) Automated name-based View Maps
NAU3922 Marker 14.4 Cotton - HDC - 15 CLU2788 Marker 29.4 (cM) Automated name-based View Maps
Cotton - TH - 15 NAU3922 Marker 115.7 (cM) Automated name-based View Maps