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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Cotton-E3
(Reference Set)
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Correspondences
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Maps 1
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - E3 [ View Map Set Info ]
Map Name: 1
Map Start: 0 cM
Map Stop: 115.3 cM
Features by Type:
70 Marker
70 Total

Map Features

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Items 1 to 25 of 70.       of 3 | Next
Cotton - E3 - 1
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
HAU0672 Marker 32.9 Cotton - Graimondii_physical - Gr_Chr05 HAU0672 Marker Cotton 60,956,414 - 60,957,595 (bp) Automated name-based View Maps
Cotton - E3 - 8 HAU0672 Marker 36.4 (cM) Automated name-based View Maps
Cotton - HDC - 8 HAU0672 Marker 104.9 (cM) Automated name-based View Maps
BNL2702 Marker 31.4 No other positions
DPL0094 Marker 30.6 Cotton - Graimondii_physical - Gr_Chr02 DPL0094 Marker Cotton 13,623,674 - 13,624,390 (bp) Automated name-based View Maps
Cotton - T3 - 1 DPL0094 Marker 48.67 (cM) Automated name-based View Maps
Cotton - HDC - 1 DPL0094 Marker 79.2 (cM) Automated name-based View Maps
BNL3090 Marker 29.8 Cotton - PK - c16 BNL3090 Marker 52.8 (cM) Automated name-based View Maps
Cotton - HDC - 15 BNL3090 Marker 90.8 (cM) Automated name-based View Maps
Cotton - E3 - 15 BNL3090 Marker 95.1 (cM) Automated name-based View Maps
Cotton - HDC - 15 BNL3090 Marker 87.5 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c1 BNL3090 Marker 168.7 (cM) Automated name-based View Maps
Cotton - CH - 15 BNL3090 Marker 111.6 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c1 BNL3090a Marker 66.28 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c15 BNL3090 Marker 115.9 (cM) Automated name-based View Maps
Cotton - PK - c15 BNL3090 Marker 89.5 (cM) Automated name-based View Maps
Cotton - TH - 15 BNL3090 Marker 54.7 (cM) Automated name-based View Maps
Cotton - T3 - 1 BNL3090 Marker 47.64 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c15 BNL3090b Marker 47.81 (cM) Automated name-based View Maps
Cotton - GVc - 15 BNL3090 Marker 79.3 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - c15 BNL3090 Marker 69.9 (cM) Automated name-based View Maps
Cotton - HDC - 16 BNL3090 Marker 47.9 (cM) Automated name-based View Maps
Cotton - TH - 1 BNL3090 Marker 63.6 (cM) Automated name-based View Maps
Cotton - HDC - 1 BNL3090 Marker 80.2 (cM) Automated name-based View Maps
Cotton - T3 - 15 BNL3090 Marker 51.86 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC2 - c1 BNL3090 Marker 86.1 (cM) Automated name-based View Maps
Cotton - GVc - 1 BNL3090 Marker 79.4 (cM) Automated name-based View Maps
Cotton - CH - 15 BNL3090 Marker 105.5 (cM) Automated name-based View Maps
TMB0062 Marker 29.7 Cotton - T3 - 1 TMB0062 Marker 52.59 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 TMB0062 Marker Cotton 15,260,015 - 15,260,793 (bp) Automated name-based View Maps
Cotton - HDC - 1 TMB0062 Marker 75 (cM) Automated name-based View Maps
CIR049 Marker 29.3 Cotton - Graimondii_physical - Gr_Chr02 CIR049 Marker Cotton 16,247,208 - 16,247,592 (bp) Automated name-based View Maps
Cotton - HDC - 1 CIR049 Marker 68.8 (cM) Automated name-based View Maps
Cotton - CH - 1 CIR049 Marker 81.6 (cM) Automated name-based View Maps
DPL0513 Marker 28.4 Cotton - Graimondii_physical - Gr_Chr13 DPL0513 Marker Cotton 23,583,527 - 23,583,969 (bp) Automated name-based View Maps
Cotton - HDC - 1 DPL0513 Marker 70.5 (cM) Automated name-based View Maps
Cotton - T3 - 1 DPL0513 Marker 56.92 (cM) Automated name-based View Maps
NAU3365 Marker 28 Cotton - E3 - 6 NAU3365 Marker 112.7 (cM) Automated name-based View Maps
Cotton - GVc - 9 NAU3365 Marker 87.8 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c9 NAU3365 Marker 51.48 (cM) Automated name-based View Maps
Cotton - TH - 9 NAU3365 Marker 100.1 (cM) Automated name-based View Maps
Cotton - HDC - 6 NAU3365 Marker 71 (cM) Automated name-based View Maps
Cotton - HDC - 9 NAU3365 Marker 97.7 (cM) Automated name-based View Maps
BNL1350 Marker 27 Cotton - Guazuncho2xVH8-BC2 - c15 BNL1350 Marker 62.8 (cM) Automated name-based View Maps
Cotton - GVc - 1 BNL1350 Marker 66.9 (cM) Automated name-based View Maps
Cotton - HDC - 15 BNL1350 Marker 82.7 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c15 BNL1350b Marker 42.84 (cM) Automated name-based View Maps
Cotton - HDC - 1 BNL1350 Marker 69.9 (cM) Automated name-based View Maps
Cotton - GVc - 15 BNL1350 Marker 70.4 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c1 BNL1350 Marker 154.1 (cM) Automated name-based View Maps
Cotton - CH - 15 BNL1350 Marker 96.6 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c1 BNL1350a Marker 62.52 (cM) Automated name-based View Maps
Cotton - T3 - 1 BNL1350 Marker 57.33 (cM) Automated name-based View Maps
Cotton - T3 - 15 BNL1350 Marker 58.61 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c15 BNL1350 Marker 103.3 (cM) Automated name-based View Maps
Cotton - E3 - 15 BNL1350 Marker 77.8 (cM) Automated name-based View Maps
Gh350 Marker 23.7 Cotton - T3 - 15 Gh350 Marker 48.96 (cM) Automated name-based View Maps
Cotton - HDC - 15 CLU325 Marker 91.6 (cM) Automated name-based View Maps
Cotton - E3 - 15 Gh350 Marker 95.8 (cM) Automated name-based View Maps
TMB0142 Marker 22.3 Cotton - T3 - 1 TMB0142 Marker 59.25 (cM) Automated name-based View Maps
Cotton - HDC - 1 TMB0142 Marker 66.9 (cM) Automated name-based View Maps
NAU4891 Marker 19.6 Cotton - TH - 1 NAU4891 Marker 64.8 (cM) Automated name-based View Maps
Cotton - HDC - 1 CLU1511 Marker 64.6 (cM) Automated name-based View Maps
HAU1351 Marker 16.7 No other positions
NAU3384 Marker 0 Cotton - Graimondii_physical - Gr_Chr02 NAU3384 Marker Cotton 31,264,484 - 31,264,842 (bp) Automated name-based View Maps
Cotton - TH - 1 NAU3384 Marker 72 (cM) Automated name-based View Maps
Cotton - HDC - 1 NAU3384 Marker 60.5 (cM) Automated name-based View Maps
HAU0309 Marker 15.2 No other positions
CIR110 Marker 115.3 Cotton - CH - 15 CIR110 Marker 182.9 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - c15 CIR110 Marker 198.3 (cM) Automated name-based View Maps
Cotton - E3 - 15 CIR110 Marker 167.9 (cM) Automated name-based View Maps
Cotton - HDC - 15 CIR110 Marker 159.9 (cM) Automated name-based View Maps
Cotton - GVc - 15 CIR110 Marker 150.7 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 CIR110 Marker Cotton 418,664 - 418,826 (bp) Automated name-based View Maps
HAU2307 Marker 110.8 Cotton - HDC - 15 CLU868 Marker 136.4 (cM) Automated name-based View Maps
Cotton - E3 - 15 HAU2307 Marker 172.1 (cM) Automated name-based View Maps
Cotton - HDC - 15 CLU868 Marker 150.2 (cM) Automated name-based View Maps
HAU1045 Marker 106.4 Cotton - HDC - 15 CLU868 Marker 150.2 (cM) Automated name-based View Maps
Cotton - HDC - 15 CLU868 Marker 136.4 (cM) Automated name-based View Maps
Cotton - E3 - 15 HAU1045 Marker 179 (cM) Automated name-based View Maps
BNL0846 Marker 105.5 No other positions
HAU3053 Marker 103.1 No other positions
HAU1166 Marker 100.1 No other positions
HAU1619 Marker 94.7 Cotton - HDC - 15 HAU1619 Marker 133.8 (cM) Automated name-based View Maps
Cotton - E3 - 15 HAU1619 Marker 147.8 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 HAU1619 Marker Cotton 1,350,901 - 1,352,279 (bp) Automated name-based View Maps
HAU0076 Marker 94.3 No other positions
MGHES37 Marker 92.3 No other positions
HAU2861 Marker 89.1 Cotton - HDC - 15 HAU2861 Marker 61.2 (cM) Automated name-based View Maps
Cotton - E3 - 15 HAU2861 Marker 40.7 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr02 HAU2861 Marker Cotton 58,870,442 - 58,870,989 (bp) Automated name-based View Maps