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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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Map Set Cotton-T3
(Reference Set)
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Correspondences
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Maps 13
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Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
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Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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Map Size: tiny small medium large Custom
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Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cotton - T3 [ View Map Set Info ]
Map Name: 13
Map Start: 0 cM
Map Stop: 109.28 cM
Features by Type:
63 Marker
63 Total

Map Features

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Items 1 to 25 of 63.       of 3 | Next
Cotton - T3 - 13
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TMB2960 Marker 83.3 Cotton - HDC - 13 TMB2960 Marker 76.6 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr13 TMB2960 Marker Cotton 41,274,734 - 41,275,343 (bp) Automated name-based View Maps
Gh592 Marker 87.03 Cotton - HDC - 13 CLU321 Marker 81.2 (cM) Automated name-based View Maps
Cotton - E3 - 13 Gh592 Marker 100.9 (cM) Automated name-based View Maps
BNL0569 Marker 88.63 Cotton - E3 - 18 BNL0569 Marker 72.9 (cM) Automated name-based View Maps
Cotton - T3 - 18 BNL0569 Marker 60.36 (cM) Automated name-based View Maps
Cotton - HDC - 18 BNL0569 Marker 70.4 (cM) Automated name-based View Maps
Cotton - HDC - 13 BNL0569 Marker 83.2 (cM) Automated name-based View Maps
Cotton - E3 - 13 BNL0569 Marker 92.6 (cM) Automated name-based View Maps
TMB0312 Marker 89.82 Cotton - Graimondii_physical - Gr_Chr13 TMB0312 Marker Cotton 48,387,978 - 48,388,493 (bp) Automated name-based View Maps
Cotton - HDC - 13 TMB0312 Marker 84.7 (cM) Automated name-based View Maps
MUSS140 Marker 91.82 Cotton - HDC - 18 CLU1708 Marker 41.5 (cM) Automated name-based View Maps
Cotton - E3 - 18 MUSS140 Marker 100 (cM) Automated name-based View Maps
Cotton - HDC - 13 CLU1708 Marker 87.2 (cM) Automated name-based View Maps
Cotton - HDC - 18 CLU1708 Marker 72 (cM) Automated name-based View Maps
JESPR211 Marker 93.26 Cotton - T3 - 21 JESPR211 Marker 103.86 (cM) Automated name-based View Maps
Cotton - T3 - 21 JESPR211 Marker 95.64 (cM) Automated name-based View Maps
Cotton - HDC - 21 CLU131 Marker 117.3 (cM) Automated name-based View Maps
Cotton - HDC - 20 CLU131 Marker 82.6 (cM) Automated name-based View Maps
Cotton - HDC - 13 CLU131 Marker 88.7 (cM) Automated name-based View Maps
Cotton - T3 - 20 JESPR211 Marker 67.19 (cM) Automated name-based View Maps
Cotton - HDC - 11 CLU131 Marker 148 (cM) Automated name-based View Maps
CM160 Marker 94.13 Cotton - T3 - 20 CM160 Marker 67 (cM) Automated name-based View Maps
Cotton - T3 - 21 CM160 Marker 103.9 (cM) Automated name-based View Maps
Cotton - HDC - 20 CM160 Marker 82.8 (cM) Automated name-based View Maps
Cotton - HDC - 13 CM160 Marker 89.5 (cM) Automated name-based View Maps
Cotton - T3 - 21 CM160 Marker 95.41 (cM) Automated name-based View Maps
Cotton - HDC - 21 CM160 Marker 127 (cM) Automated name-based View Maps
Cotton - HDC - 21 CM160 Marker 133.7 (cM) Automated name-based View Maps
UCcg11073_51 Marker 95.71 Cotton - HDC - 13 UCcg11073_51 Marker 91.1 (cM) Automated name-based View Maps
MUSB0450 Marker 96.87 Cotton - HDC - 13 MUSB0450 Marker 92.3 (cM) Automated name-based View Maps
BNL2667 Marker 97.75 Cotton - T3 - 18 BNL2667 Marker 68.07 (cM) Automated name-based View Maps
Cotton - HDC - 13 BNL2667 Marker 93.1 (cM) Automated name-based View Maps
Cotton - HDC - 18 BNL2667 Marker 77.9 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr13 BNL2667 Marker Cotton 51,158,315 - 51,158,596 (bp) Automated name-based View Maps
BNL4061 Marker 99.52 Cotton - CH - 13 BNL4061 Marker 50.9 (cM) Automated name-based View Maps
Cotton - HDC - 13 BNL4061 Marker 94.9 (cM) Automated name-based View Maps
Cotton - E3 - 13 BNL4061 Marker 66.1 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr13 BNL4061 Marker Cotton 52,284,447 - 52,284,913 (bp) Automated name-based View Maps
MUCS145 Marker 100.4 Cotton - T3 - 18 MUCS145 Marker 73.41 (cM) Automated name-based View Maps
Cotton - HDC - 18 CLU2792 Marker 83.7 (cM) Automated name-based View Maps
Cotton - E3 - 13 MUCS145 Marker 74.5 (cM) Automated name-based View Maps
Cotton - HDC - 13 CLU2792 Marker 95.8 (cM) Automated name-based View Maps
Cotton - HDC - 13 CLU2792 Marker 97.2 (cM) Automated name-based View Maps
Gh034 Marker 100.96 Cotton - Graimondii_physical - Gr_Chr01 Gh034 Marker Cotton 44,851,998 - 44,852,604 (bp) Automated name-based View Maps
Cotton - HDC - 13 Gh034 Marker 96.4 (cM) Automated name-based View Maps
Cotton - E3 - 13 Gh034 Marker 101.8 (cM) Automated name-based View Maps
MUCS267 Marker 103.02 Cotton - HDC - 13 CLU2832 Marker 98.4 (cM) Automated name-based View Maps
Cotton - CH - 13 MUCS267 Marker 53.5 (cM) Automated name-based View Maps
MUSB0685 Marker 109.28 Cotton - HDC - 13 MUSB0685 Marker 104.7 (cM) Automated name-based View Maps
Cotton - E3 - 18 MUSB0685 Marker 110.3 (cM) Automated name-based View Maps
Cotton - HDC - 18 MUSB0685 Marker 64.5 (cM) Automated name-based View Maps
Cotton - T3 - 18 MUSB0685 Marker 54.3 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr13 MUSB0685 Marker Cotton 43,363,005 - 43,363,917 (bp) Automated name-based View Maps
Gh646 Marker 0 Cotton - HDC - 13 CLU266 Marker 0 (cM) Automated name-based View Maps
BNL1403 Marker 7.17 Cotton - T3 - 21 BNL1403 Marker 90.54 (cM) Automated name-based View Maps
Cotton - T3 - 14 BNL1403 Marker 126.42 (cM) Automated name-based View Maps
Cotton - T3 - 22 BNL1403 Marker 108.23 (cM) Automated name-based View Maps
Cotton - HDC - 21 BNL1403 Marker 122.8 (cM) Automated name-based View Maps
Cotton - HDC - 14 BNL1403 Marker 128.8 (cM) Automated name-based View Maps
Cotton - HDC - 13 BNL1403 Marker 7.2 (cM) Automated name-based View Maps
Cotton - HDC - 22 BNL1403 Marker 99.4 (cM) Automated name-based View Maps
TMB1638 Marker 10.66 Cotton - HDC - 13 TMB1638 Marker 10.7 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr13 TMB1638 Marker Cotton 222,130 - 222,603 (bp) Automated name-based View Maps
BNL0409 Marker 13.43 Cotton - E3 - 13 BNL0409 Marker 194.7 (cM) Automated name-based View Maps
Cotton - TH - 13 BNL0409 Marker 127.1 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-RIL - c13 BNL0409 Marker 65.44 (cM) Automated name-based View Maps
Cotton - HDC - 13 BNL0409 Marker 13.4 (cM) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - A01 BNL409 Marker 217.4 (cM) Automated name-based View Maps
TMB2347 Marker 18.5 Cotton - HDC - 13 TMB2347 Marker 18.5 (cM) Automated name-based View Maps
BNL0243 Marker 20.57 Cotton - HDC - 13 BNL0243 Marker 20.6 (cM) Automated name-based View Maps
Cotton - TH - 13 BNL0243 Marker 114.4 (cM) Automated name-based View Maps
Cotton - HDC - 18 BNL0243 Marker 13 (cM) Automated name-based View Maps
Cotton - TH - 18 BNL0243 Marker 111.1 (cM) Automated name-based View Maps
Cotton - T3 - 18 BNL0243 Marker 6.14 (cM) Automated name-based View Maps
UCcg10487_205 Marker 26.03 Cotton - HDC - 13 UCcg10487_205 Marker 26 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr13 UCcg10487_205 Marker Cotton 2,060,303 - 2,060,405 (bp) Automated name-based View Maps
CIR054 Marker 27.67 Cotton - Guazuncho2xVH8-RIL - c13 CIR054 Marker 72.93 (cM) Automated name-based View Maps
Cotton - Graimondii_physical - Gr_Chr13 CIR054 Marker Cotton 2,224,605 - 2,224,812 (bp) Automated name-based View Maps
Cotton - Guazuncho2xVH8-BC1 - A01 CIR054 Marker 193.6 (cM) Automated name-based View Maps
Cotton - E3 - 13 CIR054 Marker 171.6 (cM) Automated name-based View Maps
Cotton - GVc - 13 CIR054 Marker 124.3 (cM) Automated name-based View Maps
Cotton - TH - 13 CIR054 Marker 101 (cM) Automated name-based View Maps
Cotton - HDC - 13 CIR054 Marker 27.7 (cM) Automated name-based View Maps
MUSS463 Marker 31.11 Cotton - HDC - 13 CLU1765 Marker 30.3 (cM) Automated name-based View Maps
Gh681 Marker 39.19 Cotton - HDC - 13 CLU445 Marker 36.2 (cM) Automated name-based View Maps
Cotton - E3 - 3 Gh681 Marker 93 (cM) Automated name-based View Maps
Cotton - E3 - 13 Gh681 Marker 154.8 (cM) Automated name-based View Maps
Cotton - T3 - 3 Gh681 Marker 55.21 (cM) Automated name-based View Maps
Cotton - HDC - 3 CLU445 Marker 64.7 (cM) Automated name-based View Maps