CMap Home | Maps | Map Search | Feature Search | Matrix | Map Sets | Feature Types | Map Types | Evidence Types | Species | Saved Links | Help | Tutorial
*Bookmarks for this page will fail after this session expires. Use the "Save Link" button to create a permanent link


**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
 Map Options
 Map Options
Map Set Cocoa-SSR_SNP_consensus_map
(Reference Set)
Min.
Correspondences
Align Vertically
Stack
Maps LG6
Start
Stop
Magnification
Flipped
hint: To save time, select the desired options before redrawing the map.
(Hide Map Menu)
 Feature Options
 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
(Hide Feature Menu)
 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
(Hide Correspondence Menu)
 Display Options
 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
(Hide Display Menu)
 Advanced Options
 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
(Hide Advanced Menu)

Map Details

Map Type: Genetic [ View Map Type Info ]
Map Set Name: Cocoa - SSR_SNP_consensus_map [ View Map Set Info ]
Map Name: LG6
Map Start: 0 cM
Map Stop: 64 cM
Features by Type:
81 Marker
81 Total

Map Features

Restrict by Map:
[ Download Map Data ]
[ Download Feature Correspondence Data ]
Items 1 to 25 of 81.       of 4 | Next
Cocoa - SSR_SNP_consensus_map - LG6
(Click headers to resort)		 Comparative Maps
Feature Type Position (cM) Map Feature Type Position Evidence Actions
TcSNP1182 Marker 39.4 Cocoa - Physical map - Tc06 TcSNP1182 Marker 11,920,943 - 11,921,731 (bp) Automated name-based View Maps
TcSNP1390 Marker 17.9 Cocoa - Physical map - Tc06 TcSNP1390 Marker 6,439,752 - 6,440,527 (bp) Automated name-based View Maps
mTcCIR337 Marker 57.4 Cocoa - Physical map - Tc06 mTcCIR337 Marker 14,859,824 - 14,860,557 (bp) Automated name-based View Maps
mTcCIR487 Marker 9.7 Cocoa - Physical map - Tc06 mTcCIR487 Marker 2,216,142 - 2,218,163 (bp) Automated name-based View Maps
TcSNP964 Marker 28.2 Cocoa - Physical map - Tc06 TcSNP964 Marker 9,360,774 - 9,360,948 (bp) Automated name-based View Maps
mTcCIR255 Marker 41.7 Cocoa - test - LG6 mTcCIR255 Marker 39.1 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 mTcCIR255 Marker 39.1 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG6 mTcCIR255 Marker 39.1 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc06 mTcCIR255 Marker 12,281,625 - 12,282,005 (bp) Automated name-based View Maps
mTcCIR367 Marker 18.2 Cocoa - Physical map - Tc06 mTcCIR367 Marker 6,535,083 - 6,536,306 (bp) Automated name-based View Maps
mTcCIR9 Marker 60.2 Cocoa - consensus_disease_res - LG6 mTcCIR9 Marker 59.1 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG6 mTcCIR9 Marker 58.5 (cM) Automated name-based View Maps
Cocoa - (Sca6xH)xC1 - LG6 mTcCIR9 Marker 67.8 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 mTcCIR9 Marker 59.1 (cM) Automated name-based View Maps
Cocoa - test - LG6 mTcCIR9 Marker 59.1 (cM) Automated name-based View Maps
Cocoa - IMC78xCatongo - LG6 mTcCIR9 Marker 128.7 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc06 mTcCIR9 Marker 15,005,639 - 15,005,955 (bp) Automated name-based View Maps
mTcCIR488 Marker 12.7 Cocoa - Physical map - Tc06 mTcCIR488 Marker 2,639,681 - 2,641,699 (bp) Automated name-based View Maps
mTcCIR413 Marker 29.3 No other positions
TcSNP894 Marker 42.9 Cocoa - Physical map - Tc06 TcSNP894 Marker 12,486,480 - 12,487,688 (bp) Automated name-based View Maps
TcSNP824 Marker 19 Cocoa - Physical map - Tc06 TcSNP824 Marker 6,875,641 - 6,876,103 (bp) Automated name-based View Maps
TcSNP1527 Marker 62.5 Cocoa - Physical map - Tc06 TcSNP1527 Marker 15,119,653 - 15,120,509 (bp) Automated name-based View Maps
mTcCIR583 Marker 14.4 Cocoa - Physical map - Tc06 mTcCIR583 Marker 3,615,857 - 3,617,877 (bp) Automated name-based View Maps
mTcCIR276 Marker 31.6 Cocoa - test - LG6 mTcCIR276 Marker 27.5 (cM) Automated name-based View Maps
Cocoa - consensus_disease_res - LG6 mTcCIR276 Marker 27.5 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG6 mTcCIR276 Marker 34.9 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc06 mTcCIR276 Marker 10,258,427 - 10,258,641 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 mTcCIR276 Marker 27.5 (cM) Automated name-based View Maps
cTcCIR225 Marker 46.2 Cocoa - consensus_disease_res - LG6 cTcCIR225 Marker 44.1 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 cTcCIR225 Marker 44.1 (cM) Automated name-based View Maps
Cocoa - test - LG6 cTcCIR225 Marker 44.1 (cM) Automated name-based View Maps
mTcCIR50 Marker 19.4 Cocoa - consensus_disease_res - LG6 mTcCIR50 Marker 15.5 (cM) Automated name-based View Maps
Cocoa - test - LG6 mTcCIR50 Marker 15.5 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc09 mTcCIR50 Marker 9,271,950 - 9,272,283 (bp) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 mTcCIR50 Marker 15.5 (cM) Automated name-based View Maps
mTcCIR291 Marker 64 Cocoa - test - LG6 mTcCIR291 Marker 62.8 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 mTcCIR291 Marker 62.8 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc06 mTcCIR291 Marker 15,327,995 - 15,328,478 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG6 mTcCIR291 Marker 62.8 (cM) Automated name-based View Maps
Cocoa - TSH516 - LG6 mTcCIR291 Marker 60.9 (cM) Automated name-based View Maps
TcSNP619 Marker 15.1 Cocoa - Physical map - Tc06 TcSNP619 Marker 3,895,282 - 3,895,500 (bp) Automated name-based View Maps
cTcCIR12 Marker 34.4 Cocoa - test - LG6 cTcCIR12 Marker 31.7 (cM) Automated name-based View Maps
Cocoa - Physical map - Tc06 cTcCIR12 Marker 10,841,906 - 10,842,082 (bp) Automated name-based View Maps
Cocoa - consensus_disease_res - LG6 cTcCIR12 Marker 31.7 (cM) Automated name-based View Maps
Cocoa - ref_UPA402xUF676 - LG6 cTcCIR12 Marker 31.7 (cM) Automated name-based View Maps
TcSNP288 Marker 47.3 Cocoa - Physical map - Tc06 TcSNP288 Marker 12,839,763 - 12,840,550 (bp) Automated name-based View Maps
TcSNP180 Marker 4.1 Cocoa - Physical map - Tc06 TcSNP180 Marker 343,305 - 345,412 (bp) Automated name-based View Maps
TcSNP1156 Marker 21.9 Cocoa - Physical map - Tc06 TcSNP1156 Marker 6,986,051 - 6,987,013 (bp) Automated name-based View Maps
mTcCIR387 Marker 15.8 Cocoa - Physical map - Tc06 mTcCIR387 Marker 4,886,488 - 4,886,968 (bp) Automated name-based View Maps
TcSNP517 Marker 34.8 Cocoa - Physical map - Tc06 TcSNP517 Marker 10,864,062 - 10,865,818 (bp) Automated name-based View Maps