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**Eliminate Orphans - Remove comparison maps that don't have correspondences to a reference map.
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 Map Options
Map Set Coffee-COFFEE_CoffeaSeqGenomeV1_DH200
(Reference Set)
Min.
Correspondences
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Maps chr2
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hint: To save time, select the desired options before redrawing the map.
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 Feature Options
Highlight Features:
Feature Types:
Feature Ignore Display if
Correspondence		 Always Display
Marker
Other
 
Show Labels: None Landmarks All
Collapse Overlapping
Features:		 No Yes
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 Correspondence Options
 Correspondence Options
Include Correspondence Types:
Evidence Ignore Use Less Than
Score		 Greater Than
Score		 Score
Automated name-based
 
Aggregate Correspondences: No 1 Line 2 Lines
Correspondence lines drawn to: Feature Map
View Intra-Slot Correspondences: No yes
Aggregate evidence types separately: No yes
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 Display Options
Map Size: tiny small medium large Custom
Font Size: Small Medium Large
Image Type: PNG JPEG GIF SVG *
Clean View (no navigation buttons): No Yes
Hide the Legend: No Yes
Size of Dot Plot Pixels: 1
*SVG output for high-resolution printing only (no hyperlinks).
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 Advanced Options

Draw Maps Using
Same Scale:		 No Yes
Clickable Image Use All Omit Features Omit All Buttons
Menu Order of Comparative Maps: Predefined
Order		 Number of
Correspondences
Ignore Image Map
Sanity Check:		 No Yes
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Map Details

Map Type: Physical [ View Map Type Info ]
Map Set Name: Coffee - COFFEE_CoffeaSeqGenomeV1_DH200 [ View Map Set Info ]
Map Name: chr2
Map Start: 0 bp
Map Stop: 54,522,928 bp
Features by Type:
33 Marker
33 Total

Map Features

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Items 1 to 25 of 33.       of 2 | Next
Coffee - COFFEE_CoffeaSeqGenomeV1_DH200 - chr2
(Click headers to resort)		 Comparative Maps
Feature Type Position (bp) Map Feature Type Position Evidence Actions
Me_ssr120329_a Marker 53,756,215 - 53,756,667 No other positions
Mg_M384 Marker 53,820,924 - 53,821,178 No other positions
Mg_M495 Marker 54,325,029 - 54,325,243 No other positions
Me_ssr121876 Marker 162,115 - 162,343 No other positions
G_4CL_C2 Marker 2,326,705 - 2,327,083 No other positions
Mg_ssrR776 Marker 4,577,125 - 4,577,310 No other positions
Mg_M329 Marker 6,710,378 - 6,710,608 No other positions
Me_ssr123669_d Marker 9,865,138 - 9,865,294 No other positions
Mg_M774 Marker 11,984,049 - 11,984,261 No other positions
Me_ssr120074 Marker 16,875,724 - 16,875,906 No other positions
GC03_CCoAMT_intron1 Marker 17,198,048 - 17,198,255 No other positions
Mg_M795 Marker 18,115,973 - 18,116,165 No other positions
Me_ssr131684 Marker 20,443,179 - 20,443,423 No other positions
Mg_M472 Marker 20,947,828 - 20,948,162 No other positions
Mg_M509 Marker 25,973,752 - 25,973,939 No other positions
Mg_CMA0031 Marker 31,251,767 - 31,251,893 No other positions
Mg_M208 Marker 42,146,471 - 42,146,739 No other positions
Me_ssr120329_b Marker 53,756,455 - 53,756,667 No other positions
Mg_M362 Marker 54,150,943 - 54,151,085 No other positions
Me_ssr124986 Marker 1,120,679 - 1,120,903 No other positions
Me_ssr123682 Marker 4,289,565 - 4,289,690 No other positions
Mg_CMA0044 Marker 4,996,871 - 4,997,020 No other positions
Mg_M468 Marker 7,919,780 - 7,920,240 No other positions
Mg_M371 Marker 11,177,082 - 11,177,367 No other positions
Me_ssr120206 Marker 13,851,580 - 13,851,766 No other positions